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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036820 through 18771 annotations produced 1 hits



(CG6852):

Annotation Number : CG6852
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036820
Gbrowse : chr3L:18862555-18863158 (+) // 100.0 //
Probeset : 1635075_at
Accessions : protein= NP_001137968; /// NP_649065;, nucleotide= NM_001144496; /// NM_140808;
Interpro : 0009055 // electron carrier activity // inferred from electronic annotation /// 0015035 // protein disulfide oxidoreduct
FlyMine data for FBgn0036820.
VDRC has 2 RNAi stocks for FBgn0036820 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain488 64 of 4 0.90None
Head703 544 of 4 1.30None
Eye1052 314 of 4 1.94Up
Thoracicoabdominal ganglion591 324 of 4 1.10None
Salivary gland1581 774 of 4 2.92Up
Crop618 264 of 4 1.10None
Midgut1139 254 of 4 2.10Up
Tubule1844 634 of 4 3.40Up
Hindgut743 214 of 4 1.40Up
Heart1264 664 of 4 2.33Up
Fat body2011 1634 of 4 3.71Up
Ovary379 154 of 4 0.70Down
Testis91 34 of 4 0.20Down
Male accessory glands1112 614 of 4 2.00Up
Virgin spermatheca2649 344 of 4 4.88Up
Mated spermatheca2332 704 of 4 4.30Up
Adult carcass981 454 of 4 1.80Up
Larval CNS408 204 of 4 0.75Down
Larval Salivary gland1711 144 of 4 3.15Up
Larval midgut1404 354 of 4 2.59Up
Larval tubule2095 544 of 4 3.90Up
Larval hindgut824 224 of 4 1.52Up
Larval fat body1467 1674 of 4 2.70Up
Larval trachea641 224 of 4 1.18None
Larval carcass615 404 of 4 1.13None
S2 cells (growing)104 14 of 4 0.19Down
Whole fly542 344 of 4

Looking for FBgn0036820. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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