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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036824 through 18771 annotations produced 1 hits


Annotation Number : CG3902
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036824
Gbrowse : chr3L:18886219-18891390 (-) // 100.0 //
Probeset : 1632980_at
Accessions : protein= NP_649069;, nucleotide= NM_140812;
Interpro : "0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0016491 // oxidoreductase activit
FlyMine data for FBgn0036824.
BDGP gene expression has embryonic in situ data for CG3902: 13 pix of staining in 7 body parts.
Homophila reports that CG3902 is a close match (2e-38) to human gene GCDH (NP_039663), a gene associated with Glutaricaciduria, type I, 231670 (3).

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain201 74 of 4 0.30Down
Head1374 744 of 4 2.30Up
Eye995 1274 of 4 1.67Up
Thoracicoabdominal ganglion243 74 of 4 0.40Down
Salivary gland1188 474 of 4 1.99Up
Crop958 614 of 4 1.60Up
Midgut604 204 of 4 1.00None
Tubule3062 2174 of 4 5.10Up
Hindgut256 104 of 4 0.40Down
Heart1225 814 of 4 2.05Up
Fat body1638 3794 of 4 2.75Up
Ovary609 114 of 4 1.00None
Testis11 14 of 4 0.00Down
Male accessory glands487 234 of 4 0.80None
Virgin spermatheca1967 1584 of 4 3.30Up
Mated spermatheca1050 1424 of 4 1.76Up
Adult carcass1276 164 of 4 2.10Up
Larval CNS628 614 of 4 1.05None
Larval Salivary gland2278 1584 of 4 3.82Up
Larval midgut1138 604 of 4 1.91Up
Larval tubule369 194 of 4 0.60Down
Larval hindgut1544 874 of 4 2.59Up
Larval fat body239 424 of 4 0.40Down
Larval trachea1203 1264 of 4 2.02Up
Larval carcass1055 2204 of 4 1.77None
S2 cells (growing)267 264 of 4 0.45Down
Whole fly596 384 of 4

Looking for FBgn0036824. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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