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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036830 through 18771 annotations produced 2 hits



/// CG14076 (CG14077 /// Ir75d):

Annotation Number : CG14077
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036830
Gbrowse : chr3L:18906132-18907213 (-) // 100.0 //
Probeset : 1641311_at
Accessions : protein= NP_001137969; /// NP_649074; /// NP_649075;, nucleotide= NM_001144497; /// NM_140817; /// NM_140818;
Pathway : 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005751 // mitochondrial respiratory
Interpro : 0004129 // cytochrome-c oxidase activity // inferred from sequence or structural similarity /// 0004129 // cytochrome-c
FlyMine data for FBgn0036830.
VDRC has 2 RNAi stocks for FBgn0036830 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head0 00 of 4 0.00Down
Eye0 00 of 4 0.01Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland4 10 of 4 0.07Down
Crop1 00 of 4 0.00Down
Midgut1 00 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart0 00 of 4 0.01Down
Fat body3 40 of 4 0.06Down
Ovary0 00 of 4 0.00Down
Testis691 134 of 411.30Up
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca1 00 of 4 0.02Down
Mated spermatheca1 00 of 4 0.03Down
Adult carcass2 00 of 4 0.00Down
Larval CNS2 10 of 4 0.03Down
Larval Salivary gland1 00 of 4 0.02Down
Larval midgut0 00 of 4 0.01Down
Larval tubule0 00 of 4 0.00Down
Larval hindgut0 00 of 4 0.01Down
Larval fat body50 361 of 4 0.80None
Larval trachea3 50 of 4 0.06Down
Larval carcass0 00 of 4 0.02Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly61 14 of 4



/// CG14076 (CG14077 /// Ir75d):

Annotation Number : CG14076
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036829 /// FBgn0036830
Gbrowse : chr3L:18901643-18904138 (-) // 100.0 //
Probeset : 1626540_at
Accessions : protein= NP_001137969; /// NP_649074; /// NP_649075;, nucleotide= NM_001144497; /// NM_140817; /// NM_140818;
Pathway : 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005751 // mitochondrial respiratory
Interpro : 0004129 // cytochrome-c oxidase activity // inferred from sequence or structural similarity /// 0004129 // cytochrome-c
FlyMine data for FBgn0036829 /// FBgn0036830.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 00 of 4 0.20Down
Head12 14 of 4 0.40Down
Eye3 10 of 4 0.11Down
Thoracicoabdominal ganglion9 11 of 4 0.30Down
Salivary gland14 31 of 4 0.45Down
Crop8 22 of 4 0.30Down
Midgut8 00 of 4 0.30Down
Tubule5 10 of 4 0.20Down
Hindgut5 10 of 4 0.20Down
Heart4 11 of 4 0.14Down
Fat body8 40 of 4 0.28Down
Ovary10 02 of 4 0.30Down
Testis405 224 of 413.00Up
Male accessory glands9 20 of 4 0.30Down
Virgin spermatheca10 10 of 4 0.34Down
Mated spermatheca7 10 of 4 0.24Down
Adult carcass9 30 of 4 0.30Down
Larval CNS9 11 of 4 0.30Down
Larval Salivary gland10 12 of 4 0.35Down
Larval midgut4 10 of 4 0.15Down
Larval tubule12 10 of 4 0.40Down
Larval hindgut5 10 of 4 0.18Down
Larval fat body28 103 of 4 0.90None
Larval trachea8 33 of 4 0.27Down
Larval carcass4 10 of 4 0.13Down
S2 cells (growing)7 02 of 4 0.24Down
Whole fly31 34 of 4

Looking for FBgn0036830. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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