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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036832 through 18771 annotations produced 1 hits



(CG18223):

Annotation Number : CG18223
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036832
Gbrowse : chr3L:18912349-18913402 (-) // 100.0 //
Probeset : 1625567_a_at
Accessions : protein= NP_649077; /// NP_730379;, nucleotide= NM_140820; /// NM_168783;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0036832.
Homophila reports that CG18223 is a close match (8e-11) to human gene C1S (NP_958850), a gene associated with C1r/C1s deficiency, combined (1);C1s deficiency, isolated (3).
VDRC has 2 RNAi stocks for FBgn0036832 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.20Down
Head6 11 of 4 0.20Down
Eye2 00 of 4 0.12Down
Thoracicoabdominal ganglion4 10 of 4 0.20Down
Salivary gland11 50 of 4 0.45None
Crop4 10 of 4 0.20Down
Midgut11 20 of 4 0.50Down
Tubule4 00 of 4 0.20Down
Hindgut3 00 of 4 0.10Down
Heart1 00 of 4 0.06Down
Fat body7 31 of 4 0.31Down
Ovary1 00 of 4 0.10Down
Testis281 144 of 411.50Up
Male accessory glands4 20 of 4 0.20Down
Virgin spermatheca3 10 of 4 0.14Down
Mated spermatheca3 10 of 4 0.16Down
Adult carcass5 20 of 4 0.20Down
Larval CNS3 10 of 4 0.15Down
Larval Salivary gland8 32 of 4 0.36Down
Larval midgut7 21 of 4 0.30Down
Larval tubule5 00 of 4 0.20Down
Larval hindgut4 01 of 4 0.17Down
Larval fat body30 143 of 4 1.20None
Larval trachea5 31 of 4 0.22Down
Larval carcass4 00 of 4 0.18Down
S2 cells (growing)3 00 of 4 0.15Down
Whole fly24 14 of 4

Looking for FBgn0036832. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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