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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036834 through 18771 annotations produced 1 hits



(CG6836):

Annotation Number : CG6836
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036834
Gbrowse : chr3L:18943731-18948509 (+) // 100.0 //
Probeset : 1635196_at
Accessions : protein= NP_649079;, nucleotide= NM_140822;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0005215 // transporter activity // inferred from sequence or structural similarity
FlyMine data for FBgn0036834.
VDRC has 1 RNAi stocks for FBgn0036834 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain166 44 of 4 3.00Up
Head179 74 of 4 3.20Up
Eye83 124 of 4 1.48None
Thoracicoabdominal ganglion55 34 of 4 1.00None
Salivary gland937 144 of 416.66Up
Crop933 144 of 416.60Up
Midgut32 13 of 4 0.60Down
Tubule13 20 of 4 0.20Down
Hindgut771 344 of 413.70Up
Heart72 64 of 4 1.29None
Fat body61 114 of 4 1.10None
Ovary15 13 of 4 0.30Down
Testis44 34 of 4 0.80Down
Male accessory glands8 20 of 4 0.20Down
Virgin spermatheca4 10 of 4 0.09Down
Mated spermatheca8 20 of 4 0.15Down
Adult carcass135 24 of 4 2.40Up
Larval CNS3 20 of 4 0.06Down
Larval Salivary gland95 104 of 4 1.70Up
Larval midgut18 10 of 4 0.33Down
Larval tubule4 10 of 4 0.10Down
Larval hindgut340 344 of 4 6.06Up
Larval fat body4 20 of 4 0.10Down
Larval trachea104 254 of 4 1.86Up
Larval carcass53 84 of 4 0.94None
S2 cells (growing)176 64 of 4 3.14Up
Whole fly56 24 of 4

Looking for FBgn0036834. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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