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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036839 through 18771 annotations produced 1 hits



(CG18136):

Annotation Number : CG18136
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036839
Gbrowse : chr3L:18994181-18996393 (-) // 100.0 //
Probeset : 1641688_at
Accessions : protein= NP_649084;, nucleotide= NM_140827;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0016564 // transcription repressor activity // in
FlyMine data for FBgn0036839.
BDGP gene expression has embryonic in situ data for CG18136: 9 pix of staining in 2 body parts.
VDRC has 2 RNAi stocks for FBgn0036839 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.20Down
Head13 ± 24 of 4 0.80None
Eye2 ± 11 of 4 0.13Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland5 ± 30 of 4 0.32Down
Crop34 ± 34 of 4 2.00Up
Midgut1 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut45 ± 34 of 4 2.60Up
Heart96 ± 54 of 4 5.43Up
Fat body5 ± 30 of 4 0.30Down
Ovary0 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands4 ± 20 of 4 0.20Down
Virgin spermatheca4 ± 10 of 4 0.27Down
Mated spermatheca6 ± 21 of 4 0.37Down
Adult carcass80 ± 64 of 4 4.50Up
Larval CNS1 ± 10 of 4 0.10Down
Larval Salivary gland4 ± 10 of 4 0.27Down
Larval midgut0 ± 00 of 4 0.05Down
Larval tubule3 ± 10 of 4 0.20Down
Larval hindgut42 ± 54 of 4 2.41Up
Larval fat body3 ± 20 of 4 0.20Down
Larval trachea9 ± 33 of 4 0.52Down
Larval carcass108 ± 204 of 4 6.08Up
S2 cells (growing)55 ± 24 of 4 3.11Up
Whole fly17 ± 14 of 4

Looking for FBgn0036839. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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