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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036842 through 18771 annotations produced 1 hits



(CG3797):

Annotation Number : CG3797
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036842
Gbrowse : chr3L:19052868-19055902 (-) // 100.0 //
Probeset : 1637453_at
Accessions : protein= NP_649085;, nucleotide= NM_140828;
Interpro : "0015020 // glucuronosyltransferase activity // inferred from sequence or structural similarity /// 0015020 // glucurono
FlyMine data for FBgn0036842.
BDGP gene expression has embryonic in situ data for CG3797: 4 pix of staining in 1 body parts.
Homophila reports that CG3797 is a close match (1e-29) to human gene GNT1;UGT1;UGT1A1 (NP_000454), a gene associated with Crigler-Najjar syndrome, type I, 218800 (3);Crigler-Najjar syndrome, type II, 606785 (3);Hyperbilirubinemia, familial transcient neonatal, 237900 (3);[Gilbert syndrome], 143500 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain154 ± 74 of 4 0.60Down
Head142 ± 84 of 4 0.50Down
Eye169 ± 74 of 4 0.63None
Thoracicoabdominal ganglion135 ± 84 of 4 0.50Down
Salivary gland160 ± 54 of 4 0.60None
Crop178 ± 44 of 4 0.70None
Midgut105 ± 34 of 4 0.40Down
Tubule69 ± 44 of 4 0.30Down
Hindgut135 ± 44 of 4 0.50Down
Heart162 ± 64 of 4 0.61None
Fat body183 ± 104 of 4 0.68None
Ovary621 ± 84 of 4 2.30Up
Testis45 ± 14 of 4 0.20Down
Male accessory glands235 ± 84 of 4 0.90None
Virgin spermatheca105 ± 14 of 4 0.39Down
Mated spermatheca113 ± 114 of 4 0.42Down
Adult carcass147 ± 64 of 4 0.50Down
Larval CNS267 ± 134 of 4 0.99None
Larval Salivary gland324 ± 164 of 4 1.21None
Larval midgut173 ± 34 of 4 0.65None
Larval tubule296 ± 114 of 4 1.10None
Larval hindgut218 ± 44 of 4 0.81None
Larval fat body235 ± 114 of 4 0.90None
Larval trachea249 ± 354 of 4 0.93None
Larval carcass248 ± 194 of 4 0.93None
S2 cells (growing)447 ± 44 of 4 1.66Up
Whole fly268 ± 354 of 4

Looking for FBgn0036842. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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