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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036849 through 18771 annotations produced 1 hits



(CG14079):

Annotation Number : CG14079
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036849
Gbrowse : chr3L:19091262-19092130 (+) // 100.0 //
Probeset : 1629536_at
Accessions : protein= NP_649091;, nucleotide= NM_140834;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036849.
BioGrid reports that CG14079 interacts with CG1487 CG17358 CG3052 CG4912 .
VDRC has 1 RNAi stocks for FBgn0036849 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.40None
Head6 ± 10 of 4 2.40None
Eye6 ± 21 of 4 2.30None
Thoracicoabdominal ganglion3 ± 10 of 4 1.20None
Salivary gland1 ± 00 of 4 0.54None
Crop0 ± 00 of 4 0.20None
Midgut1 ± 00 of 4 0.40None
Tubule2 ± 00 of 4 0.90None
Hindgut1 ± 00 of 4 0.60None
Heart10 ± 21 of 4 3.67Up
Fat body1 ± 10 of 4 0.57None
Ovary4 ± 20 of 4 1.60None
Testis16 ± 24 of 4 5.90Up
Male accessory glands4 ± 10 of 4 1.50None
Virgin spermatheca2 ± 00 of 4 0.88None
Mated spermatheca1 ± 00 of 4 0.36None
Adult carcass1 ± 00 of 4 0.70None
Larval CNS2 ± 10 of 4 0.78None
Larval Salivary gland5 ± 10 of 4 1.81None
Larval midgut11 ± 20 of 4 4.12Up
Larval tubule10 ± 01 of 4 3.60Up
Larval hindgut3 ± 10 of 4 1.11None
Larval fat body6 ± 20 of 4 2.40None
Larval trachea7 ± 30 of 4 2.61None
Larval carcass1 ± 00 of 4 0.63None
S2 cells (growing)19 ± 14 of 4 6.94Up
Whole fly2 ± 10 of 4

Looking for FBgn0036849. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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