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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036856 through 18771 annotations produced 1 hits



/// (CG42374 /// CG9666):

Annotation Number : CG9666
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036856 /// FBgn0259720
Gbrowse : chr3L:19256868-19259938 (+) // 100.0 //
Probeset : 1633418_at
Accessions : protein= NP_001137972; /// NP_001137973; /// NP_649098;, nucleotide= NM_001144500; /// NM_001144501; /// NM_140841;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // infe
FlyMine data for FBgn0036856 /// FBgn0259720.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain83 24 of 4 0.80Down
Head62 14 of 4 0.60Down
Eye72 34 of 4 0.68Down
Thoracicoabdominal ganglion67 24 of 4 0.60Down
Salivary gland72 74 of 4 0.68Down
Crop79 24 of 4 0.70Down
Midgut63 34 of 4 0.60Down
Tubule88 24 of 4 0.80Down
Hindgut60 14 of 4 0.60Down
Heart55 14 of 4 0.52Down
Fat body64 74 of 4 0.61Down
Ovary191 64 of 4 1.80Up
Testis164 34 of 4 1.50Up
Male accessory glands36 34 of 4 0.30Down
Virgin spermatheca58 24 of 4 0.55Down
Mated spermatheca63 34 of 4 0.60Down
Adult carcass51 24 of 4 0.50Down
Larval CNS129 194 of 4 1.22None
Larval Salivary gland79 34 of 4 0.75Down
Larval midgut59 44 of 4 0.56Down
Larval tubule82 44 of 4 0.80Down
Larval hindgut77 14 of 4 0.74Down
Larval fat body95 54 of 4 0.90None
Larval trachea94 64 of 4 0.89Down
Larval carcass79 44 of 4 0.75Down
S2 cells (growing)65 14 of 4 0.62Down
Whole fly106 24 of 4

Looking for FBgn0036856. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime