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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036857 through 18771 annotations produced 1 hits



(CG9629):

Annotation Number : CG9629
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036857
Gbrowse : chr3L:19259571-19262009 (-) // 100.0 //
Probeset : 1623216_s_at
Accessions : protein= NP_649099;, nucleotide= NM_140842;
Interpro : 0004029 // aldehyde dehydrogenase (NAD) activity // inferred from sequence or structural similarity /// 0004029 // aldeh
FlyMine data for FBgn0036857.
BDGP gene expression has embryonic in situ data for CG9629: 17 pix of staining in 3 body parts.
Homophila reports that CG9629 is a close match (2e-17) to human gene ALDH10;ALDH3A2;FALDH;SLS (NP_001026976), a gene associated with Sjogren-Larsson syndrome, 270200 (3).
VDRC has 2 RNAi stocks for FBgn0036857 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain127 ± 24 of 4 1.50Up
Head217 ± 114 of 4 2.60Up
Eye54 ± 114 of 4 0.65None
Thoracicoabdominal ganglion189 ± 94 of 4 2.20Up
Salivary gland13 ± 40 of 4 0.16Down
Crop10 ± 22 of 4 0.10Down
Midgut55 ± 54 of 4 0.70Down
Tubule1916 ± 1614 of 422.70Up
Hindgut53 ± 54 of 4 0.60Down
Heart267 ± 154 of 4 3.17Up
Fat body654 ± 884 of 4 7.76Up
Ovary22 ± 04 of 4 0.30Down
Testis15 ± 04 of 4 0.20Down
Male accessory glands4 ± 20 of 4 0.00Down
Virgin spermatheca889 ± 864 of 410.54Up
Mated spermatheca634 ± 774 of 4 7.53Up
Adult carcass240 ± 84 of 4 2.80Up
Larval CNS85 ± 84 of 4 1.01None
Larval Salivary gland24 ± 14 of 4 0.29Down
Larval midgut479 ± 394 of 4 5.69Up
Larval tubule1570 ± 364 of 418.60Up
Larval hindgut94 ± 124 of 4 1.12None
Larval fat body910 ± 974 of 410.80Up
Larval trachea15 ± 14 of 4 0.19Down
Larval carcass58 ± 34 of 4 0.70Down
S2 cells (growing)359 ± 24 of 4 4.26Up
Whole fly84 ± 34 of 4

Looking for FBgn0036857. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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