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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036861 through 18771 annotations produced 1 hits



(CG14089):

Annotation Number : CG14089
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036861
Gbrowse : chr3L:19273225-19273900 (-) // 100.0 //
Probeset : 1637930_at
Accessions : protein= NP_649103;, nucleotide= NM_140846;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036861.
BioGrid reports that CG14089 interacts with CG15370 CG16791 CG4711 CG2238 CG2986 CG4270 CG4700 CG5272 CG5390 CG9083 CG9888 CG17161 .
VDRC has 1 RNAi stocks for FBgn0036861 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 20 of 4 1.80None
Head4 ± 10 of 4 1.10None
Eye5 ± 30 of 4 1.30None
Thoracicoabdominal ganglion2 ± 00 of 4 0.60None
Salivary gland30 ± 80 of 4 6.85Up
Crop7 ± 30 of 4 1.70None
Midgut11 ± 30 of 4 2.50None
Tubule10 ± 10 of 4 2.30Up
Hindgut10 ± 10 of 4 2.30Up
Heart3 ± 10 of 4 0.74None
Fat body13 ± 70 of 4 3.08None
Ovary8 ± 00 of 4 1.90Up
Testis4 ± 00 of 4 0.90None
Male accessory glands10 ± 20 of 4 2.40None
Virgin spermatheca5 ± 20 of 4 1.30None
Mated spermatheca12 ± 30 of 4 2.73None
Adult carcass5 ± 10 of 4 1.10None
Larval CNS13 ± 20 of 4 3.04Up
Larval Salivary gland19 ± 60 of 4 4.32None
Larval midgut15 ± 20 of 4 3.34Up
Larval tubule11 ± 30 of 4 2.50None
Larval hindgut9 ± 30 of 4 2.03None
Larval fat body6 ± 30 of 4 1.30None
Larval trachea9 ± 00 of 4 2.21Up
Larval carcass41 ± 40 of 4 9.12Up
S2 cells (growing)9 ± 20 of 4 2.08None
Whole fly4 ± 10 of 4

Looking for FBgn0036861. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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