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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036877 through 18771 annotations produced 1 hits



(CG9452):

Annotation Number : CG9452
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036877
Gbrowse : chr3L:19494244-19496961 (-) // 100.0 //
Probeset : 1632348_at
Accessions : protein= NP_649119;, nucleotide= NM_140862;
Interpro : 0003993 // acid phosphatase activity // inferred from sequence or structural similarity /// 0003993 // acid phosphatase
FlyMine data for FBgn0036877.
VDRC has 2 RNAi stocks for FBgn0036877 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head36 ± 34 of 4 1.70Up
Eye9 ± 11 of 4 0.45Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.20Down
Salivary gland60 ± 74 of 4 2.85Up
Crop9 ± 12 of 4 0.40Down
Midgut3 ± 10 of 4 0.20Down
Tubule102 ± 234 of 4 4.90Up
Hindgut24 ± 14 of 4 1.20Up
Heart10 ± 33 of 4 0.52None
Fat body12 ± 41 of 4 0.57Down
Ovary1 ± 00 of 4 0.10Down
Testis17 ± 24 of 4 0.80None
Male accessory glands1 ± 10 of 4 0.10Down
Virgin spermatheca8 ± 12 of 4 0.39Down
Mated spermatheca18 ± 44 of 4 0.86None
Adult carcass70 ± 34 of 4 3.30Up
Larval CNS4 ± 10 of 4 0.19Down
Larval Salivary gland226 ± 114 of 410.72Up
Larval midgut4 ± 10 of 4 0.23Down
Larval tubule196 ± 174 of 4 9.30Up
Larval hindgut16 ± 81 of 4 0.77None
Larval fat body8 ± 21 of 4 0.40Down
Larval trachea23 ± 54 of 4 1.10None
Larval carcass134 ± 784 of 4 6.37None
S2 cells (growing)0 ± 00 of 4 0.03Down
Whole fly21 ± 04 of 4

Looking for FBgn0036877. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime