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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036879 through 18771 annotations produced 1 hits



CG9290 (Cpr76Bb):

Annotation Number : CG9290
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036879
Gbrowse : chr3L:19512794-19513391 (+) // 100.0 //
Probeset : 1635926_at
Accessions : protein= NP_649121;, nucleotide= NM_140864;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008012
FlyMine data for FBgn0036879.
VDRC has 2 RNAi stocks for FBgn0036879 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 3.80None
Head2 ± 00 of 4 1.70None
Eye5 ± 11 of 4 4.14None
Thoracicoabdominal ganglion1 ± 10 of 4 1.50None
Salivary gland13 ± 40 of 410.74None
Crop2 ± 00 of 4 2.10None
Midgut2 ± 00 of 4 2.00Up
Tubule4 ± 00 of 4 3.70Up
Hindgut4 ± 00 of 4 3.60Up
Heart4 ± 00 of 4 3.54Up
Fat body4 ± 30 of 4 3.30None
Ovary3 ± 10 of 4 2.50None
Testis4 ± 00 of 4 3.60Up
Male accessory glands1 ± 00 of 4 1.40None
Virgin spermatheca4 ± 10 of 4 3.72Up
Mated spermatheca9 ± 30 of 4 7.24None
Adult carcass3 ± 10 of 4 3.00None
Larval CNS3 ± 21 of 4 2.42None
Larval Salivary gland10 ± 22 of 4 7.96Up
Larval midgut5 ± 20 of 4 4.20None
Larval tubule3 ± 10 of 4 2.70None
Larval hindgut5 ± 10 of 4 4.72None
Larval fat body8 ± 00 of 4 6.60Up
Larval trachea6 ± 12 of 4 5.24Up
Larval carcass8 ± 00 of 4 6.54Up
S2 cells (growing)2 ± 00 of 4 1.82None
Whole fly1 ± 00 of 4

Looking for FBgn0036879. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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