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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036881 through 18771 annotations produced 1 hits



CG9299 (Cpr76Bd):

Annotation Number : CG9299
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036881
Gbrowse : chr3L:19526305-19530513 (+) // 100.0 //
Probeset : 1637391_at
Accessions : protein= NP_001097645;, nucleotide= NM_001104175;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0042302
FlyMine data for FBgn0036881.
BDGP gene expression has embryonic in situ data for CG9299: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0036881 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.70None
Head7 ± 20 of 4 1.10None
Eye2 ± 10 of 4 0.36None
Thoracicoabdominal ganglion6 ± 20 of 4 0.90None
Salivary gland8 ± 20 of 4 1.23None
Crop8 ± 10 of 4 1.20None
Midgut16 ± 30 of 4 2.40None
Tubule6 ± 00 of 4 0.90None
Hindgut9 ± 30 of 4 1.40None
Heart4 ± 20 of 4 0.57None
Fat body5 ± 30 of 4 0.78None
Ovary5 ± 00 of 4 0.80None
Testis6 ± 10 of 4 0.90None
Male accessory glands8 ± 20 of 4 1.20None
Virgin spermatheca7 ± 20 of 4 1.03None
Mated spermatheca5 ± 20 of 4 0.71None
Adult carcass35 ± 43 of 4 5.00Up
Larval CNS5 ± 20 of 4 0.80None
Larval Salivary gland12 ± 20 of 4 1.74None
Larval midgut7 ± 30 of 4 1.05None
Larval tubule6 ± 00 of 4 0.90None
Larval hindgut13 ± 10 of 4 1.93None
Larval fat body4 ± 10 of 4 0.70None
Larval trachea4 ± 20 of 4 0.57None
Larval carcass21 ± 20 of 4 3.05Up
S2 cells (growing)4 ± 10 of 4 0.68None
Whole fly7 ± 20 of 4

Looking for FBgn0036881. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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