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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036889 through 18771 annotations produced 1 hits



(CG14100):

Annotation Number : CG14100
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036889
Gbrowse : chr3L:19582162-19583615 (-) // 100.0 //
Probeset : 1633605_at
Accessions : protein= NP_649130;, nucleotide= NM_140873;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from
FlyMine data for FBgn0036889.
VDRC has 4 RNAi stocks for FBgn0036889 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain101 14 of 4 1.10None
Head51 04 of 4 0.50Down
Eye75 34 of 4 0.81Down
Thoracicoabdominal ganglion137 54 of 4 1.50Up
Salivary gland24 62 of 4 0.27Down
Crop49 34 of 4 0.50Down
Midgut39 24 of 4 0.40Down
Tubule42 24 of 4 0.50Down
Hindgut45 14 of 4 0.50Down
Heart43 24 of 4 0.47Down
Fat body39 44 of 4 0.42Down
Ovary208 84 of 4 2.20Up
Testis12 04 of 4 0.10Down
Male accessory glands27 14 of 4 0.30Down
Virgin spermatheca47 34 of 4 0.51Down
Mated spermatheca54 14 of 4 0.58Down
Adult carcass34 23 of 4 0.40Down
Larval CNS98 134 of 4 1.05None
Larval Salivary gland49 34 of 4 0.52Down
Larval midgut39 24 of 4 0.42Down
Larval tubule26 14 of 4 0.30Down
Larval hindgut79 74 of 4 0.85None
Larval fat body21 24 of 4 0.20Down
Larval trachea57 44 of 4 0.62Down
Larval carcass46 74 of 4 0.49Down
S2 cells (growing)45 14 of 4 0.49Down
Whole fly93 54 of 4

Looking for FBgn0036889. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime