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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036891 through 18771 annotations produced 1 hits



(CG9372):

Annotation Number : CG9372
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036891
Gbrowse : chr3L:19599309-19601468 (+) // 100.0 //
Probeset : 1629468_at
Accessions : protein= NP_649132;, nucleotide= NM_140875;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0036891.
BDGP gene expression has embryonic in situ data for CG9372: 15 pix of staining in 4 body parts.
Homophila reports that CG9372 is a close match (7e-12) to human gene HP (NP_005134), a gene associated with [Anhaptoglobinemia] (3);[Hypohaptoglobinemia] (3).
VDRC has 1 RNAi stocks for FBgn0036891 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 ± 34 of 4 0.30Down
Head700 ± 414 of 4 4.80Up
Eye327 ± 144 of 4 2.27Up
Thoracicoabdominal ganglion34 ± 43 of 4 0.20Down
Salivary gland19 ± 50 of 4 0.13Down
Crop18 ± 33 of 4 0.10Down
Midgut71 ± 64 of 4 0.50Down
Tubule26 ± 52 of 4 0.20Down
Hindgut59 ± 24 of 4 0.40Down
Heart761 ± 124 of 4 5.27Up
Fat body622 ± 374 of 4 4.30Up
Ovary5 ± 10 of 4 0.00Down
Testis21 ± 24 of 4 0.20Down
Male accessory glands10 ± 20 of 4 0.10Down
Virgin spermatheca912 ± 304 of 4 6.31Up
Mated spermatheca759 ± 394 of 4 5.25Up
Adult carcass751 ± 334 of 4 5.20Up
Larval CNS20 ± 43 of 4 0.14Down
Larval Salivary gland28 ± 24 of 4 0.20Down
Larval midgut53 ± 54 of 4 0.37Down
Larval tubule6 ± 10 of 4 0.00Down
Larval hindgut46 ± 44 of 4 0.32Down
Larval fat body40 ± 51 of 4 0.30Down
Larval trachea2514 ± 1784 of 417.40Up
Larval carcass614 ± 414 of 4 4.25Up
S2 cells (growing)2548 ± 574 of 417.63Up
Whole fly144 ± 84 of 4

Looking for FBgn0036891. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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