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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036892 through 18771 annotations produced 1 hits



(CG8798):

Annotation Number : CG8798
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036892
Gbrowse : chr3L:19600947-19604591 (-) // 100.0 //
Probeset : 1628352_a_at
Accessions : protein= NP_649133; /// NP_730435;, nucleotide= NM_140876; /// NM_168806;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0005759 // mitochondrial matrix // inferred from seq
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electro
FlyMine data for FBgn0036892.
BDGP gene expression has embryonic in situ data for CG8798: 12 pix of staining in 13 body parts.
TRiP has 2 RNAi stocks for FBgn0036892 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036892 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain246 84 of 4 6.20Up
Head87 64 of 4 2.20Up
Eye119 64 of 4 3.00Up
Thoracicoabdominal ganglion387 34 of 4 9.70Up
Salivary gland84 54 of 4 2.13Up
Crop69 44 of 4 1.70Up
Midgut51 14 of 4 1.30Up
Tubule128 64 of 4 3.20Up
Hindgut80 54 of 4 2.00Up
Heart98 44 of 4 2.47Up
Fat body76 44 of 4 1.91Up
Ovary55 14 of 4 1.40Up
Testis20 12 of 4 0.50Down
Male accessory glands46 22 of 4 1.20None
Virgin spermatheca90 24 of 4 2.28Up
Mated spermatheca88 54 of 4 2.22Up
Adult carcass83 24 of 4 2.10Up
Larval CNS129 104 of 4 3.25Up
Larval Salivary gland42 14 of 4 1.07None
Larval midgut50 34 of 4 1.26None
Larval tubule51 34 of 4 1.30Up
Larval hindgut65 74 of 4 1.65Up
Larval fat body31 41 of 4 0.80None
Larval trachea96 94 of 4 2.43Up
Larval carcass64 64 of 4 1.62Up
S2 cells (growing)37 10 of 4 0.93None
Whole fly39 24 of 4

Looking for FBgn0036892. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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