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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036893 through 18771 annotations produced 1 hits



(CG9376):

Annotation Number : CG9376
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036893
Gbrowse : chr3L:19605638-19606589 (+) // 100.0 //
Probeset : 1632835_at
Accessions : protein= NP_649134;, nucleotide= NM_140877;
Pathway : 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016021 // integral to membrane //
FlyMine data for FBgn0036893.
BDGP gene expression has embryonic in situ data for CG9376: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0036893 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain92 34 of 4 0.80Down
Head66 34 of 4 0.60Down
Eye141 104 of 4 1.19None
Thoracicoabdominal ganglion83 14 of 4 0.70Down
Salivary gland211 54 of 4 1.78Up
Crop43 14 of 4 0.40Down
Midgut99 34 of 4 0.80None
Tubule122 24 of 4 1.00None
Hindgut63 34 of 4 0.50Down
Heart80 24 of 4 0.68Down
Fat body49 44 of 4 0.42Down
Ovary227 24 of 4 1.90Up
Testis96 64 of 4 0.80None
Male accessory glands168 54 of 4 1.40Up
Virgin spermatheca117 34 of 4 0.99None
Mated spermatheca116 74 of 4 0.98None
Adult carcass54 74 of 4 0.50Down
Larval CNS156 124 of 4 1.32Up
Larval Salivary gland180 84 of 4 1.52Up
Larval midgut101 14 of 4 0.85None
Larval tubule157 44 of 4 1.30Up
Larval hindgut87 34 of 4 0.73Down
Larval fat body108 54 of 4 0.90None
Larval trachea111 104 of 4 0.94None
Larval carcass56 54 of 4 0.48Down
S2 cells (growing)143 14 of 4 1.21Up
Whole fly118 74 of 4

Looking for FBgn0036893. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime