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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036895 through 18771 annotations produced 1 hits


Annotation Number : CG9392
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036895
Gbrowse : chr3L:19613627-19617293 (+) // 100.0 //
Probeset : 1630121_at
Accessions : protein= NP_649136;, nucleotide= NM_140879;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036895.
BDGP gene expression has embryonic in situ data for CG9392: 4 pix of staining in 1 body parts.
BioGrid reports that CG9392 interacts with CG9938 .
VDRC has 1 RNAi stocks for FBgn0036895 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.10Down
Head2 10 of 4 0.00Down
Eye4 10 of 4 0.09Down
Thoracicoabdominal ganglion2 00 of 4 0.10Down
Salivary gland4 20 of 4 0.10Down
Crop3 00 of 4 0.10Down
Midgut4 20 of 4 0.10Down
Tubule4 00 of 4 0.10Down
Hindgut0 00 of 4 0.00Down
Heart2 11 of 4 0.06Down
Fat body1 00 of 4 0.03Down
Ovary1 00 of 4 0.00Down
Testis605 184 of 412.00Up
Male accessory glands3 10 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.02Down
Mated spermatheca2 00 of 4 0.04Down
Adult carcass1 00 of 4 0.00Down
Larval CNS3 10 of 4 0.06Down
Larval Salivary gland1 00 of 4 0.02Down
Larval midgut4 10 of 4 0.08Down
Larval tubule2 10 of 4 0.00Down
Larval hindgut1 00 of 4 0.02Down
Larval fat body42 222 of 4 0.80None
Larval trachea3 31 of 4 0.07Down
Larval carcass1 00 of 4 0.02Down
S2 cells (growing)5 10 of 4 0.10Down
Whole fly50 14 of 4

Looking for FBgn0036895. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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