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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036896 through 18771 annotations produced 1 hits



CG8789 (wnd):

Annotation Number : CG8789
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036896
Gbrowse : chr3L:19617504-19628696 (-) // 100.0 //
Probeset : 1633727_s_at
Accessions : protein= NP_649137; /// NP_788540; /// NP_788541;, nucleotide= NM_140880; /// NM_176362; /// NM_176363;
Interpro : 0004672 // protein kinase activity // non-traceable author statement /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0036896.
Homophila reports that CG8789 is a close match (4e-11) to human gene ACVR1;ACVRLK2;ALK2;FOP (NP_001096), a gene associated with Fibrodysplasia ossificans progressiva, 135100 (3).
TRiP has 2 RNAi stocks for FBgn0036896 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036896 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain427 ± 84 of 4 3.80Up
Head244 ± 134 of 4 2.20Up
Eye414 ± 174 of 4 3.71Up
Thoracicoabdominal ganglion358 ± 134 of 4 3.20Up
Salivary gland52 ± 34 of 4 0.47Down
Crop148 ± 54 of 4 1.30Up
Midgut236 ± 94 of 4 2.10Up
Tubule324 ± 204 of 4 2.90Up
Hindgut135 ± 64 of 4 1.20None
Heart82 ± 44 of 4 0.74None
Fat body132 ± 104 of 4 1.19None
Ovary108 ± 34 of 4 1.00None
Testis13 ± 14 of 4 0.10Down
Male accessory glands33 ± 34 of 4 0.30Down
Virgin spermatheca394 ± 254 of 4 3.53Up
Mated spermatheca324 ± 114 of 4 2.91Up
Adult carcass93 ± 34 of 4 0.80None
Larval CNS326 ± 164 of 4 2.92Up
Larval Salivary gland56 ± 84 of 4 0.50Down
Larval midgut247 ± 84 of 4 2.21Up
Larval tubule155 ± 44 of 4 1.40Up
Larval hindgut184 ± 44 of 4 1.65Up
Larval fat body147 ± 84 of 4 1.30None
Larval trachea234 ± 114 of 4 2.10Up
Larval carcass138 ± 44 of 4 1.24None
S2 cells (growing)142 ± 64 of 4 1.28None
Whole fly111 ± 114 of 4

Looking for FBgn0036896. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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