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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036899 through 18771 annotations produced 1 hits

teyrha-meyrha (tey):

Annotation Number : CG8780
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036899
Gbrowse : chr3L:19643917-19656763 (-) // 99.44 //
Probeset : 1636272_at
Accessions : protein= NP_001137981; /// NP_649140;, nucleotide= NM_001144509; /// NM_140883;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036899.
BDGP gene expression has embryonic in situ data for CG8780: 34 pix of staining in 7 body parts.
VDRC has 3 RNAi stocks for FBgn0036899 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain53 24 of 4 9.10Up
Head10 12 of 4 1.80Up
Eye2 00 of 4 0.48None
Thoracicoabdominal ganglion113 34 of 419.30Up
Salivary gland8 30 of 4 1.41None
Crop0 00 of 4 0.10Down
Midgut28 24 of 4 4.80Up
Tubule6 00 of 4 1.10None
Hindgut22 34 of 4 3.90Up
Heart2 00 of 4 0.34Down
Fat body13 102 of 4 2.33None
Ovary1 00 of 4 0.20Down
Testis9 03 of 4 1.70Up
Male accessory glands1 00 of 4 0.20Down
Virgin spermatheca15 13 of 4 2.64Up
Mated spermatheca11 31 of 4 1.89None
Adult carcass4 10 of 4 0.80None
Larval CNS35 24 of 4 6.05Up
Larval Salivary gland2 00 of 4 0.45None
Larval midgut18 14 of 4 3.07Up
Larval tubule1 00 of 4 0.20Down
Larval hindgut11 12 of 4 1.91Up
Larval fat body1 00 of 4 0.20Down
Larval trachea2 10 of 4 0.34Down
Larval carcass3 20 of 4 0.61None
S2 cells (growing)1 00 of 4 0.20Down
Whole fly5 12 of 4

Looking for FBgn0036899. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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