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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036900 through 18771 annotations produced 2 hits



(CG8765):

Annotation Number : CG8765
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036900
Gbrowse : chr3L:19677037-19680459 (-) // 100.0 //
Probeset : 1634934_at
Accessions : protein= NP_649141; /// NP_730439;, nucleotide= NM_140884; /// NM_168807;
FlyMine data for FBgn0036900.
TRiP has 2 RNAi stocks for FBgn0036900 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036900 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain154 ± 34 of 4 2.00Up
Head98 ± 74 of 4 1.30None
Eye161 ± 94 of 4 2.13Up
Thoracicoabdominal ganglion122 ± 24 of 4 1.60Up
Salivary gland102 ± 124 of 4 1.35None
Crop108 ± 44 of 4 1.40Up
Midgut46 ± 24 of 4 0.60Down
Tubule71 ± 44 of 4 0.90None
Hindgut82 ± 24 of 4 1.10None
Heart52 ± 34 of 4 0.69Down
Fat body104 ± 114 of 4 1.37Up
Ovary145 ± 44 of 4 1.90Up
Testis68 ± 24 of 4 0.90None
Male accessory glands42 ± 54 of 4 0.60Down
Virgin spermatheca113 ± 84 of 4 1.50Up
Mated spermatheca106 ± 54 of 4 1.40Up
Adult carcass82 ± 34 of 4 1.10None
Larval CNS117 ± 34 of 4 1.55Up
Larval Salivary gland74 ± 44 of 4 0.98None
Larval midgut46 ± 34 of 4 0.61Down
Larval tubule62 ± 34 of 4 0.80None
Larval hindgut72 ± 74 of 4 0.95None
Larval fat body59 ± 84 of 4 0.80None
Larval trachea64 ± 54 of 4 0.85None
Larval carcass83 ± 43 of 4 1.10None
S2 cells (growing)140 ± 34 of 4 1.85Up
Whole fly75 ± 54 of 4



(CG8765):

Annotation Number : CG8765
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036900
Gbrowse : chr3L:19679550-19680459 (-) // 100.0 //
Probeset : 1627570_a_at
Accessions : protein= NP_649141; /// NP_730439;, nucleotide= NM_140884; /// NM_168807;
FlyMine data for FBgn0036900.
TRiP has 2 RNAi stocks for FBgn0036900 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036900 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 ± 44 of 4 1.20None
Head18 ± 42 of 4 0.80None
Eye6 ± 10 of 4 0.28Down
Thoracicoabdominal ganglion10 ± 32 of 4 0.50Down
Salivary gland11 ± 40 of 4 0.48None
Crop30 ± 63 of 4 1.30None
Midgut13 ± 10 of 4 0.60Down
Tubule4 ± 00 of 4 0.20Down
Hindgut17 ± 01 of 4 0.70Down
Heart2 ± 00 of 4 0.11Down
Fat body5 ± 40 of 4 0.26Down
Ovary35 ± 34 of 4 1.60Up
Testis14 ± 14 of 4 0.60Down
Male accessory glands8 ± 20 of 4 0.40Down
Virgin spermatheca5 ± 00 of 4 0.23Down
Mated spermatheca4 ± 00 of 4 0.18Down
Adult carcass12 ± 20 of 4 0.60Down
Larval CNS6 ± 21 of 4 0.27Down
Larval Salivary gland4 ± 20 of 4 0.19Down
Larval midgut6 ± 20 of 4 0.30Down
Larval tubule13 ± 20 of 4 0.60Down
Larval hindgut5 ± 00 of 4 0.24Down
Larval fat body17 ± 12 of 4 0.80None
Larval trachea4 ± 10 of 4 0.19Down
Larval carcass4 ± 10 of 4 0.21Down
S2 cells (growing)41 ± 14 of 4 1.82Up
Whole fly23 ± 14 of 4

Looking for FBgn0036900. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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