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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036905 through 18771 annotations produced 2 hits



pyruvate kinase /// (CG12229 /// CG14101):

Annotation Number : CG12229
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036723
Gbrowse : chr3L:17427571-17429531 (-) // 100.0 //
Probeset : 1627928_at
Accessions : protein= NP_648980;, nucleotide= NM_140723;
Interpro : 0000287 // magnesium ion binding // inferred from electronic annotation /// 0004743 // pyruvate kinase activity // infer
FlyMine data for FBgn0036723.
BDGP gene expression has embryonic in situ data for CG12229: 4 pix of staining in 1 body parts.
BioGrid reports that CG12229 interacts with CG6518 CG7697 .
VDRC has 2 RNAi stocks for FBgn0036723 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 00 of 4 0.00Down
Head2 00 of 4 0.00Down
Eye3 10 of 4 0.03Down
Thoracicoabdominal ganglion2 10 of 4 0.00Down
Salivary gland10 10 of 4 0.09Down
Crop4 10 of 4 0.00Down
Midgut6 00 of 4 0.10Down
Tubule4 00 of 4 0.00Down
Hindgut6 21 of 4 0.10Down
Heart4 00 of 4 0.04Down
Fat body4 00 of 4 0.04Down
Ovary3 00 of 4 0.00Down
Testis1480 164 of 413.00Up
Male accessory glands6 10 of 4 0.10Down
Virgin spermatheca3 10 of 4 0.03Down
Mated spermatheca6 00 of 4 0.06Down
Adult carcass6 20 of 4 0.10Down
Larval CNS2 10 of 4 0.02Down
Larval Salivary gland2 10 of 4 0.02Down
Larval midgut5 00 of 4 0.05Down
Larval tubule7 11 of 4 0.10Down
Larval hindgut5 00 of 4 0.05Down
Larval fat body96 524 of 4 0.80None
Larval trachea5 41 of 4 0.05Down
Larval carcass6 21 of 4 0.06Down
S2 cells (growing)2 10 of 4 0.02Down
Whole fly114 54 of 4



/// (CG14101 /// CG42529):

Annotation Number : CG14101
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036905 /// FBgn0260434
Gbrowse : chr3L:19753438-19754737 (+) // 100.0 // /// chr3L:19722023-19723322 (+) // 100.0 //
Probeset : 1627687_at
Accessions : protein= NP_001163471; /// NP_649146;, nucleotide= NM_001170000; /// NM_140889;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036905 /// FBgn0260434.
BioGrid reports that CG14101 interacts with CG3124 CG4983 CG8854 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head2 00 of 4 0.00Down
Eye5 00 of 4 0.04Down
Thoracicoabdominal ganglion2 11 of 4 0.00Down
Salivary gland2 10 of 4 0.02Down
Crop4 20 of 4 0.00Down
Midgut2 10 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut1 10 of 4 0.00Down
Heart2 00 of 4 0.02Down
Fat body3 30 of 4 0.03Down
Ovary2 10 of 4 0.00Down
Testis1586 374 of 411.20Up
Male accessory glands7 20 of 4 0.00Down
Virgin spermatheca2 10 of 4 0.02Down
Mated spermatheca5 11 of 4 0.03Down
Adult carcass8 30 of 4 0.10Down
Larval CNS0 10 of 4 0.01Down
Larval Salivary gland5 21 of 4 0.04Down
Larval midgut3 10 of 4 0.03Down
Larval tubule3 00 of 4 0.00Down
Larval hindgut0 00 of 4 0.00Down
Larval fat body105 514 of 4 0.70None
Larval trachea6 51 of 4 0.04Down
Larval carcass2 10 of 4 0.02Down
S2 cells (growing)1 00 of 4 0.01Down
Whole fly141 84 of 4

Looking for FBgn0036905. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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