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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036906 through 18771 annotations produced 1 hits



(CG14102):

Annotation Number : CG14102
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036906
Gbrowse : chr3L:19792077-19794386 (-) // 100.0 //
Probeset : 1641235_at
Accessions : protein= NP_649147;, nucleotide= NM_140890;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036906.
BDGP gene expression has embryonic in situ data for CG14102: 4 pix of staining in 1 body parts.
BioGrid reports that CG14102 interacts with CG5958 .
VDRC has 2 RNAi stocks for FBgn0036906 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain62 ± 24 of 4 1.30None
Head34 ± 14 of 4 0.70Down
Eye31 ± 44 of 4 0.65Down
Thoracicoabdominal ganglion68 ± 14 of 4 1.40Up
Salivary gland29 ± 62 of 4 0.60None
Crop30 ± 04 of 4 0.60Down
Midgut12 ± 11 of 4 0.30Down
Tubule9 ± 11 of 4 0.20Down
Hindgut22 ± 24 of 4 0.50Down
Heart14 ± 24 of 4 0.30Down
Fat body15 ± 62 of 4 0.32Down
Ovary101 ± 64 of 4 2.10Up
Testis36 ± 24 of 4 0.80None
Male accessory glands38 ± 44 of 4 0.80None
Virgin spermatheca19 ± 14 of 4 0.39Down
Mated spermatheca20 ± 34 of 4 0.43Down
Adult carcass22 ± 12 of 4 0.50Down
Larval CNS38 ± 24 of 4 0.79None
Larval Salivary gland21 ± 23 of 4 0.44Down
Larval midgut6 ± 20 of 4 0.13Down
Larval tubule13 ± 24 of 4 0.30Down
Larval hindgut18 ± 14 of 4 0.38Down
Larval fat body17 ± 62 of 4 0.40Down
Larval trachea18 ± 64 of 4 0.37Down
Larval carcass12 ± 13 of 4 0.26Down
S2 cells (growing)31 ± 04 of 4 0.65Down
Whole fly48 ± 44 of 4

Looking for FBgn0036906. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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