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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036909 through 18771 annotations produced 1 hits



(CG15881):

Annotation Number : CG15881
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036909
Gbrowse : chr3L:19798280-19800037 (+) // 100.0 //
Probeset : 1640430_s_at
Accessions : protein= NP_649150; /// NP_730454;, nucleotide= NM_140893; /// NM_168819;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036909.
BioGrid reports that CG15881 interacts with CG5546 .
VDRC has 2 RNAi stocks for FBgn0036909 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain159 44 of 4 0.60Down
Head108 84 of 4 0.40Down
Eye65 44 of 4 0.23Down
Thoracicoabdominal ganglion125 84 of 4 0.40Down
Salivary gland60 64 of 4 0.21Down
Crop88 24 of 4 0.30Down
Midgut116 104 of 4 0.40Down
Tubule171 104 of 4 0.60Down
Hindgut65 64 of 4 0.20Down
Heart123 64 of 4 0.43Down
Fat body156 324 of 4 0.55Down
Ovary501 144 of 4 1.80Up
Testis77 54 of 4 0.30Down
Male accessory glands226 164 of 4 0.80Down
Virgin spermatheca196 104 of 4 0.69Down
Mated spermatheca219 144 of 4 0.77Down
Adult carcass115 74 of 4 0.40Down
Larval CNS346 194 of 4 1.22Up
Larval Salivary gland437 174 of 4 1.54Up
Larval midgut120 124 of 4 0.42Down
Larval tubule148 54 of 4 0.50Down
Larval hindgut254 134 of 4 0.89None
Larval fat body113 44 of 4 0.40Down
Larval trachea351 424 of 4 1.23Up
Larval carcass331 314 of 4 1.16None
S2 cells (growing)152 54 of 4 0.54Down
Whole fly284 134 of 4

Looking for FBgn0036909. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime