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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036916 through 18771 annotations produced 1 hits



Mtr3 (Mtr3):

Annotation Number : CG8025
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036916
Gbrowse : chr3L:19905690-19906729 (-) // 100.0 //
Probeset : 1630440_at
Accessions : protein= NP_649157;, nucleotide= NM_140900;
Pathway : 0000176 // nuclear exosome (RNase complex) // inferred from physical interaction /// 0000176 // nuclear exosome (RNase c
Interpro : 0000175 // 3'-5'-exoribonuclease activity // inferred from sequence or structural similarity /// 0000175 // 3'-5'-exorib
FlyMine data for FBgn0036916.
BioGrid reports that CG8025 interacts with CG8395 CG12225 CG3931 .
VDRC has 2 RNAi stocks for FBgn0036916 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain46 ± 14 of 4 0.60Down
Head49 ± 14 of 4 0.70Down
Eye50 ± 14 of 4 0.67Down
Thoracicoabdominal ganglion37 ± 14 of 4 0.50Down
Salivary gland86 ± 54 of 4 1.13None
Crop76 ± 14 of 4 1.00None
Midgut54 ± 24 of 4 0.70Down
Tubule56 ± 34 of 4 0.70Down
Hindgut67 ± 34 of 4 0.90None
Heart46 ± 24 of 4 0.62Down
Fat body53 ± 64 of 4 0.70Down
Ovary109 ± 64 of 4 1.40Up
Testis76 ± 14 of 4 1.00None
Male accessory glands105 ± 34 of 4 1.40Up
Virgin spermatheca38 ± 04 of 4 0.51Down
Mated spermatheca52 ± 34 of 4 0.69Down
Adult carcass48 ± 14 of 4 0.60Down
Larval CNS109 ± 124 of 4 1.43Up
Larval Salivary gland97 ± 34 of 4 1.28Up
Larval midgut32 ± 12 of 4 0.43Down
Larval tubule50 ± 14 of 4 0.70Down
Larval hindgut57 ± 64 of 4 0.75None
Larval fat body55 ± 44 of 4 0.70Down
Larval trachea113 ± 174 of 4 1.49Up
Larval carcass66 ± 34 of 4 0.87None
S2 cells (growing)82 ± 34 of 4 1.09None
Whole fly76 ± 44 of 4

Looking for FBgn0036916. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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