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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036925 through 18771 annotations produced 1 hits

schumacher-levy (schuy):

Annotation Number : CG17736
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036925
Gbrowse : chr3L:19979176-19981172 (+) // 100.0 //
Probeset : 1626032_at
Accessions : protein= NP_649166;, nucleotide= NM_140909;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation
FlyMine data for FBgn0036925.
BDGP gene expression has embryonic in situ data for CG17736: 11 pix of staining in 2 body parts.
TRiP has 1 RNAi stocks for FBgn0036925 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036925 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head0 00 of 4 0.00Down
Eye1 10 of 4 0.02Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland3 10 of 4 0.04Down
Crop0 00 of 4 0.00Down
Midgut0 00 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut0 00 of 4 0.00Down
Heart1 00 of 4 0.01Down
Fat body0 00 of 4 0.01Down
Ovary0 00 of 4 0.00Down
Testis1140 364 of 413.90Up
Male accessory glands0 00 of 4 0.00Down
Virgin spermatheca0 00 of 4 0.01Down
Mated spermatheca1 00 of 4 0.01Down
Adult carcass1 00 of 4 0.00Down
Larval CNS0 00 of 4 0.00Down
Larval Salivary gland0 00 of 4 0.01Down
Larval midgut1 00 of 4 0.01Down
Larval tubule0 00 of 4 0.00Down
Larval hindgut0 00 of 4 0.00Down
Larval fat body68 433 of 4 0.80None
Larval trachea4 80 of 4 0.06Down
Larval carcass0 00 of 4 0.01Down
S2 cells (growing)0 00 of 4 0.00Down
Whole fly81 74 of 4

Looking for FBgn0036925. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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