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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036929 through 18771 annotations produced 1 hits



Fibrinogen-related protein (CG7668):

Annotation Number : CG7668
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036929
Gbrowse : chr3L:19995857-19997706 (+) // 100.0 //
Probeset : 1641540_a_at
Accessions : protein= NP_649170; /// NP_730478;, nucleotide= NM_140913; /// NM_168830;
Interpro : 0005102 // receptor binding // inferred from electronic annotation
FlyMine data for FBgn0036929.
Homophila reports that CG7668 is a close match (1e-11) to human gene FGG (NP_068656), a gene associated with Dysfibrinogenemia, gamma type (3);Hypofibrinogenemia, gamma type (3);Thrombophilia, dysfibrinogenemic (3).
VDRC has 1 RNAi stocks for FBgn0036929 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain115 ± 34 of 4 0.70Down
Head151 ± 44 of 4 0.90None
Eye150 ± 64 of 4 0.89None
Thoracicoabdominal ganglion127 ± 44 of 4 0.80Down
Salivary gland354 ± 164 of 4 2.11Up
Crop427 ± 64 of 4 2.50Up
Midgut316 ± 114 of 4 1.90Up
Tubule372 ± 134 of 4 2.20Up
Hindgut349 ± 164 of 4 2.10Up
Heart277 ± 124 of 4 1.65Up
Fat body263 ± 114 of 4 1.57Up
Ovary303 ± 94 of 4 1.80Up
Testis55 ± 54 of 4 0.30Down
Male accessory glands350 ± 144 of 4 2.10Up
Virgin spermatheca539 ± 124 of 4 3.21Up
Mated spermatheca574 ± 454 of 4 3.42Up
Adult carcass229 ± 114 of 4 1.40Up
Larval CNS142 ± 54 of 4 0.85None
Larval Salivary gland448 ± 294 of 4 2.67Up
Larval midgut258 ± 24 of 4 1.54Up
Larval tubule691 ± 264 of 4 4.10Up
Larval hindgut362 ± 84 of 4 2.16Up
Larval fat body339 ± 324 of 4 2.00Up
Larval trachea252 ± 334 of 4 1.50Up
Larval carcass474 ± 144 of 4 2.82Up
S2 cells (growing)402 ± 114 of 4 2.40Up
Whole fly168 ± 84 of 4

Looking for FBgn0036929. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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