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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036932 through 18771 annotations produced 1 hits



(CG14184):

Annotation Number : CG14184
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036932
Gbrowse : chr3L:20021066-20022052 (-) // 100.0 //
Probeset : 1633364_at
Accessions : protein= NP_649173;, nucleotide= NM_140916;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036932.
VDRC has 3 RNAi stocks for FBgn0036932 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain287 ± 94 of 4 1.10Up
Head333 ± 54 of 4 1.30Up
Eye444 ± 204 of 4 1.71Up
Thoracicoabdominal ganglion263 ± 64 of 4 1.00None
Salivary gland630 ± 184 of 4 2.42Up
Crop479 ± 104 of 4 1.80Up
Midgut329 ± 164 of 4 1.30Up
Tubule180 ± 94 of 4 0.70Down
Hindgut344 ± 104 of 4 1.30Up
Heart742 ± 364 of 4 2.85Up
Fat body495 ± 514 of 4 1.90Up
Ovary348 ± 54 of 4 1.30Up
Testis86 ± 24 of 4 0.30Down
Male accessory glands391 ± 144 of 4 1.50Up
Virgin spermatheca337 ± 174 of 4 1.29Up
Mated spermatheca300 ± 124 of 4 1.15Up
Adult carcass384 ± 204 of 4 1.50Up
Larval CNS182 ± 34 of 4 0.70Down
Larval Salivary gland278 ± 114 of 4 1.07None
Larval midgut283 ± 124 of 4 1.09None
Larval tubule596 ± 164 of 4 2.30Up
Larval hindgut269 ± 144 of 4 1.03None
Larval fat body438 ± 514 of 4 1.70Up
Larval trachea395 ± 314 of 4 1.52Up
Larval carcass215 ± 84 of 4 0.83Down
S2 cells (growing)203 ± 34 of 4 0.78Down
Whole fly260 ± 64 of 4

Looking for FBgn0036932. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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