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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036939 through 18771 annotations produced 1 hits



(CG7365):

Annotation Number : CG7365
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036939
Gbrowse : chr3L:20117395-20120465 (-) // 100.0 //
Probeset : 1631157_at
Accessions : protein= NP_649178;, nucleotide= NM_140921;
Pathway : engulfment // inferred from mutant phenotype"
FlyMine data for FBgn0036939.
BDGP gene expression has embryonic in situ data for CG7365: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0036939 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036939 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head80 ± 24 of 4 2.30Up
Eye252 ± 154 of 4 7.25Up
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland4 ± 10 of 4 0.12Down
Crop28 ± 14 of 4 0.80None
Midgut3 ± 10 of 4 0.10Down
Tubule6 ± 30 of 4 0.20Down
Hindgut1575 ± 414 of 445.20Up
Heart2 ± 00 of 4 0.06Down
Fat body4 ± 40 of 4 0.12Down
Ovary11 ± 14 of 4 0.30Down
Testis3 ± 00 of 4 0.10Down
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca2 ± 00 of 4 0.07Down
Mated spermatheca1 ± 00 of 4 0.04Down
Adult carcass35 ± 34 of 4 1.00None
Larval CNS3 ± 00 of 4 0.09Down
Larval Salivary gland6 ± 10 of 4 0.17Down
Larval midgut4 ± 20 of 4 0.14Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut568 ± 474 of 416.33Up
Larval fat body3 ± 10 of 4 0.10Down
Larval trachea70 ± 174 of 4 2.03Up
Larval carcass48 ± 93 of 4 1.39None
S2 cells (growing)5 ± 10 of 4 0.15Down
Whole fly34 ± 34 of 4

Looking for FBgn0036939. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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