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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036941 through 18771 annotations produced 1 hits



(CG7335):

Annotation Number : CG7335
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036941
Gbrowse : chr3L:20125239-20126368 (-) // 100.0 //
Probeset : 1639258_at
Accessions : protein= NP_649180;, nucleotide= NM_140923;
Interpro : 0004454 // ketohexokinase activity // inferred from sequence or structural similarity /// 0004454 // ketohexokinase acti
FlyMine data for FBgn0036941.
BDGP gene expression has embryonic in situ data for CG7335: 4 pix of staining in 1 body parts.
Homophila reports that CG7335 is a close match (3e-22) to human gene KHK (NP_006479), a gene associated with [Fructosuria] (3).
VDRC has 3 RNAi stocks for FBgn0036941 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head7 ± 21 of 4 0.20Down
Eye4 ± 10 of 4 0.08Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland16 ± 60 of 4 0.32Down
Crop9 ± 20 of 4 0.20Down
Midgut18 ± 32 of 4 0.40Down
Tubule5 ± 00 of 4 0.10Down
Hindgut11 ± 00 of 4 0.20Down
Heart4 ± 10 of 4 0.09Down
Fat body7 ± 40 of 4 0.14Down
Ovary6 ± 10 of 4 0.10Down
Testis660 ± 284 of 413.10Up
Male accessory glands9 ± 20 of 4 0.20Down
Virgin spermatheca5 ± 20 of 4 0.10Down
Mated spermatheca6 ± 20 of 4 0.13Down
Adult carcass9 ± 30 of 4 0.20Down
Larval CNS5 ± 30 of 4 0.12Down
Larval Salivary gland11 ± 30 of 4 0.24Down
Larval midgut14 ± 40 of 4 0.29Down
Larval tubule7 ± 20 of 4 0.10Down
Larval hindgut10 ± 10 of 4 0.20Down
Larval fat body47 ± 184 of 4 0.90None
Larval trachea8 ± 40 of 4 0.16Down
Larval carcass21 ± 10 of 4 0.43Down
S2 cells (growing)6 ± 10 of 4 0.13Down
Whole fly50 ± 44 of 4

Looking for FBgn0036941. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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