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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036942 through 18771 annotations produced 1 hits



(CG7328):

Annotation Number : CG7328
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036942
Gbrowse : chr3L:20132309-20133605 (-) // 99.69 //
Probeset : 1637216_at
Accessions : protein= NP_649181;, nucleotide= NM_140924;
Interpro : 0004454 // ketohexokinase activity // inferred from sequence or structural similarity /// 0004454 // ketohexokinase acti
FlyMine data for FBgn0036942.
BDGP gene expression has embryonic in situ data for CG7328: 11 pix of staining in 3 body parts.
Homophila reports that CG7328 is a close match (1e-45) to human gene KHK (NP_006479), a gene associated with [Fructosuria] (3).
BioGrid reports that CG7328 interacts with CG9986 .
TRiP has 1 RNAi stocks for FBgn0036942 available for purchase.
VDRC has 4 RNAi stocks for FBgn0036942 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 ± 14 of 4 0.50Down
Head43 ± 34 of 4 0.90None
Eye27 ± 14 of 4 0.58Down
Thoracicoabdominal ganglion41 ± 04 of 4 0.90Down
Salivary gland88 ± 64 of 4 1.84Up
Crop37 ± 14 of 4 0.80Down
Midgut40 ± 12 of 4 0.90Down
Tubule67 ± 34 of 4 1.40Up
Hindgut40 ± 54 of 4 0.80None
Heart54 ± 24 of 4 1.15None
Fat body91 ± 124 of 4 1.92Up
Ovary66 ± 44 of 4 1.40Up
Testis29 ± 13 of 4 0.60Down
Male accessory glands48 ± 34 of 4 1.00None
Virgin spermatheca175 ± 104 of 4 3.68Up
Mated spermatheca136 ± 74 of 4 2.87Up
Adult carcass64 ± 74 of 4 1.40None
Larval CNS26 ± 34 of 4 0.56Down
Larval Salivary gland26 ± 11 of 4 0.56Down
Larval midgut41 ± 54 of 4 0.88None
Larval tubule61 ± 44 of 4 1.30None
Larval hindgut30 ± 24 of 4 0.64Down
Larval fat body161 ± 204 of 4 3.40Up
Larval trachea33 ± 34 of 4 0.71Down
Larval carcass20 ± 12 of 4 0.43Down
S2 cells (growing)28 ± 14 of 4 0.60Down
Whole fly47 ± 14 of 4

Looking for FBgn0036942. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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