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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036947 through 18771 annotations produced 1 hits



CG7306 (obst-F):

Annotation Number : CG7306
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036947
Gbrowse : chr3L:20193542-20194738 (-) // 100.0 //
Probeset : 1625554_at
Accessions : protein= NP_649186;, nucleotide= NM_140929;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation /// 0008061 // chitin binding // inferred from reviewed
FlyMine data for FBgn0036947.
VDRC has 1 RNAi stocks for FBgn0036947 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 00 of 4 0.70None
Head8 ± 13 of 4 1.10None
Eye6 ± 11 of 4 0.80None
Thoracicoabdominal ganglion8 ± 10 of 4 0.90None
Salivary gland21 ± 32 of 4 2.60Up
Crop7 ± 20 of 4 0.90None
Midgut13 ± 03 of 4 1.60Up
Tubule10 ± 02 of 4 1.20Up
Hindgut7 ± 11 of 4 0.90None
Heart5 ± 10 of 4 0.62None
Fat body12 ± 42 of 4 1.50None
Ovary6 ± 00 of 4 0.70None
Testis7 ± 11 of 4 0.90None
Male accessory glands18 ± 22 of 4 2.10Up
Virgin spermatheca11 ± 12 of 4 1.36None
Mated spermatheca10 ± 12 of 4 1.24None
Adult carcass14 ± 20 of 4 1.70None
Larval CNS7 ± 23 of 4 0.90None
Larval Salivary gland10 ± 20 of 4 1.22None
Larval midgut1539 ± 1954 of 4183.25Up
Larval tubule114 ± 44 of 413.60Up
Larval hindgut36 ± 44 of 4 4.31Up
Larval fat body7 ± 20 of 4 0.90None
Larval trachea2 ± 10 of 4 0.35Down
Larval carcass7 ± 21 of 4 0.94None
S2 cells (growing)6 ± 01 of 4 0.79None
Whole fly8 ± 12 of 4

Looking for FBgn0036947. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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