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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036950 through 18771 annotations produced 1 hits



(CG6996):

Annotation Number : CG6996
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036950
Gbrowse : chr3L:20200999-20202058 (+) // 100.0 //
Probeset : 1629127_at
Accessions : protein= NP_649189;, nucleotide= NM_140932;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008061 // chitin binding // inferred from electron
FlyMine data for FBgn0036950.
VDRC has 2 RNAi stocks for FBgn0036950 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 11 of 4 0.60None
Head8 ± 12 of 4 0.80None
Eye4 ± 11 of 4 0.43Down
Thoracicoabdominal ganglion9 ± 11 of 4 0.90None
Salivary gland22 ± 50 of 4 2.03None
Crop10 ± 00 of 4 1.00None
Midgut15 ± 11 of 4 1.40Up
Tubule7 ± 00 of 4 0.70Down
Hindgut12 ± 01 of 4 1.10None
Heart2 ± 00 of 4 0.27Down
Fat body21 ± 54 of 4 1.93Up
Ovary8 ± 10 of 4 0.70None
Testis45 ± 54 of 4 4.10Up
Male accessory glands14 ± 21 of 4 1.40None
Virgin spermatheca12 ± 12 of 4 1.15None
Mated spermatheca10 ± 11 of 4 0.94None
Adult carcass17 ± 20 of 4 1.60None
Larval CNS10 ± 32 of 4 0.97None
Larval Salivary gland11 ± 11 of 4 1.04None
Larval midgut554 ± 664 of 450.86Up
Larval tubule8 ± 10 of 4 0.70None
Larval hindgut11 ± 12 of 4 1.07None
Larval fat body17 ± 20 of 4 1.60Up
Larval trachea6 ± 32 of 4 0.64None
Larval carcass11 ± 10 of 4 1.08None
S2 cells (growing)10 ± 00 of 4 0.99None
Whole fly10 ± 12 of 4

Looking for FBgn0036950. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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