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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036951 through 18771 annotations produced 1 hits



(CG7017):

Annotation Number : CG7017
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036951
Gbrowse : chr3L:20203534-20205218 (-) // 100.0 //
Probeset : 1623981_at
Accessions : protein= NP_649190;, nucleotide= NM_140933;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation /// 0016490 // structural constituent of peritrophic me
FlyMine data for FBgn0036951.
BDGP gene expression has embryonic in situ data for CG7017: 10 pix of staining in 2 body parts.
VDRC has 3 RNAi stocks for FBgn0036951 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 00 of 4 0.40Down
Head8 22 of 4 0.60None
Eye6 31 of 4 0.49None
Thoracicoabdominal ganglion6 11 of 4 0.50Down
Salivary gland17 13 of 4 1.26None
Crop6 10 of 4 0.50Down
Midgut65 94 of 4 4.80Up
Tubule6 01 of 4 0.50Down
Hindgut6 10 of 4 0.50Down
Heart4 10 of 4 0.35Down
Fat body5 42 of 4 0.43Down
Ovary4 01 of 4 0.30Down
Testis3 00 of 4 0.20Down
Male accessory glands10 20 of 4 0.80None
Virgin spermatheca7 02 of 4 0.57None
Mated spermatheca5 10 of 4 0.37Down
Adult carcass9 21 of 4 0.70None
Larval CNS3 21 of 4 0.24Down
Larval Salivary gland7 10 of 4 0.57None
Larval midgut5109 1804 of 4372.93Up
Larval tubule27 34 of 4 2.00Up
Larval hindgut31 14 of 4 2.30Up
Larval fat body15 22 of 4 1.10None
Larval trachea3 11 of 4 0.23Down
Larval carcass7 22 of 4 0.55None
S2 cells (growing)6 11 of 4 0.49Down
Whole fly13 24 of 4

Looking for FBgn0036951. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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