Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036959 through 18771 annotations produced 1 hits



(CG6951):

Annotation Number : CG6951
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036959
Gbrowse : chr3L:20234370-20238238 (+) // 100.0 //
Probeset : 1639552_s_at
Accessions : protein= NP_649197; /// NP_730502;, nucleotide= NM_140940; /// NM_168838;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004132 // dCMP deaminase activity // inferred
FlyMine data for FBgn0036959.
BioGrid reports that CG6951 interacts with CG6951 .
VDRC has 3 RNAi stocks for FBgn0036959 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 ± 14 of 4 0.50Down
Head45 ± 24 of 4 0.60Down
Eye44 ± 24 of 4 0.62Down
Thoracicoabdominal ganglion46 ± 14 of 4 0.60Down
Salivary gland86 ± 44 of 4 1.20None
Crop62 ± 44 of 4 0.90None
Midgut51 ± 24 of 4 0.70Down
Tubule76 ± 54 of 4 1.10None
Hindgut53 ± 34 of 4 0.70Down
Heart51 ± 14 of 4 0.72Down
Fat body52 ± 44 of 4 0.73Down
Ovary177 ± 24 of 4 2.50Up
Testis22 ± 14 of 4 0.30Down
Male accessory glands90 ± 114 of 4 1.30None
Virgin spermatheca42 ± 44 of 4 0.59Down
Mated spermatheca46 ± 34 of 4 0.65Down
Adult carcass50 ± 44 of 4 0.70Down
Larval CNS64 ± 64 of 4 0.89None
Larval Salivary gland57 ± 34 of 4 0.80None
Larval midgut29 ± 24 of 4 0.41Down
Larval tubule68 ± 14 of 4 0.90None
Larval hindgut41 ± 34 of 4 0.57Down
Larval fat body28 ± 12 of 4 0.40Down
Larval trachea68 ± 124 of 4 0.95None
Larval carcass38 ± 24 of 4 0.54Down
S2 cells (growing)49 ± 14 of 4 0.69Down
Whole fly72 ± 54 of 4

Looking for FBgn0036959. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime