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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036962 through 18771 annotations produced 1 hits



(CG17122):

Annotation Number : CG17122
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036962
Gbrowse : chr3L:20266488-20268435 (-) // 99.74 //
Probeset : 1634050_at
Accessions : protein= NP_730506;, nucleotide= NM_170639;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036962.
BioGrid reports that CG17122 interacts with CG18766 .
VDRC has 3 RNAi stocks for FBgn0036962 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 11 of 4 0.30Down
Head7 20 of 4 0.30Down
Eye3 10 of 4 0.13Down
Thoracicoabdominal ganglion8 20 of 4 0.30Down
Salivary gland14 60 of 4 0.54None
Crop3 10 of 4 0.10Down
Midgut6 20 of 4 0.20Down
Tubule1 00 of 4 0.10Down
Hindgut1 00 of 4 0.00Down
Heart1 00 of 4 0.06Down
Fat body3 20 of 4 0.13Down
Ovary1 00 of 4 0.10Down
Testis384 74 of 414.50Up
Male accessory glands3 00 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.05Down
Mated spermatheca2 10 of 4 0.09Down
Adult carcass7 10 of 4 0.30Down
Larval CNS12 11 of 4 0.46Down
Larval Salivary gland2 10 of 4 0.10Down
Larval midgut4 10 of 4 0.18Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut1 00 of 4 0.07Down
Larval fat body37 151 of 4 1.40None
Larval trachea4 40 of 4 0.17Down
Larval carcass1 00 of 4 0.07Down
S2 cells (growing)4 10 of 4 0.18Down
Whole fly26 14 of 4

Looking for FBgn0036962. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime