Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036964 through 18771 annotations produced 1 hits



(CG6480):

Annotation Number : CG6480
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036964
Gbrowse : chr3L:20288944-20290000 (-) // 100.0 //
Probeset : 1631101_at
Accessions : protein= NP_649202;, nucleotide= NM_140945;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0015030 // Cajal body // inferred from electronic annotati
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036964.
BioGrid reports that CG6480 interacts with CG9638 .
VDRC has 3 RNAi stocks for FBgn0036964 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain89 ± 44 of 4 0.80Down
Head96 ± 24 of 4 0.90Down
Eye118 ± 64 of 4 1.09None
Thoracicoabdominal ganglion72 ± 64 of 4 0.70Down
Salivary gland122 ± 44 of 4 1.12Up
Crop156 ± 94 of 4 1.40Up
Midgut116 ± 24 of 4 1.10None
Tubule135 ± 44 of 4 1.20Up
Hindgut114 ± 24 of 4 1.00None
Heart117 ± 34 of 4 1.08None
Fat body121 ± 64 of 4 1.11Up
Ovary172 ± 34 of 4 1.60Up
Testis50 ± 34 of 4 0.50Down
Male accessory glands149 ± 64 of 4 1.40Up
Virgin spermatheca90 ± 14 of 4 0.83Down
Mated spermatheca96 ± 24 of 4 0.88Down
Adult carcass78 ± 54 of 4 0.70Down
Larval CNS244 ± 74 of 4 2.24Up
Larval Salivary gland106 ± 74 of 4 0.98None
Larval midgut84 ± 44 of 4 0.77Down
Larval tubule169 ± 54 of 4 1.60Up
Larval hindgut128 ± 64 of 4 1.18None
Larval fat body130 ± 104 of 4 1.20None
Larval trachea174 ± 64 of 4 1.60Up
Larval carcass101 ± 34 of 4 0.93None
S2 cells (growing)143 ± 44 of 4 1.32Up
Whole fly109 ± 34 of 4

Looking for FBgn0036964. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime