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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036967 through 18771 annotations produced 1 hits



(CG6597):

Annotation Number : CG6597
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036967
Gbrowse : chr3L:20295533-20302611 (+) // 100.0 //
Probeset : 1628167_s_at
Accessions : protein= NP_649204; /// NP_730510;, nucleotide= NM_140947; /// NM_168842;
FlyMine data for FBgn0036967.
BDGP gene expression has embryonic in situ data for CG6597: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0036967 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain200 ± 24 of 4 0.70Down
Head130 ± 64 of 4 0.40Down
Eye143 ± 44 of 4 0.49Down
Thoracicoabdominal ganglion192 ± 74 of 4 0.70Down
Salivary gland148 ± 44 of 4 0.51Down
Crop276 ± 64 of 4 0.90None
Midgut74 ± 54 of 4 0.30Down
Tubule101 ± 14 of 4 0.30Down
Hindgut154 ± 94 of 4 0.50Down
Heart114 ± 24 of 4 0.39Down
Fat body102 ± 164 of 4 0.35Down
Ovary526 ± 164 of 4 1.80Up
Testis269 ± 74 of 4 0.90None
Male accessory glands179 ± 64 of 4 0.60Down
Virgin spermatheca82 ± 34 of 4 0.28Down
Mated spermatheca96 ± 84 of 4 0.33Down
Adult carcass207 ± 14 of 4 0.70Down
Larval CNS344 ± 204 of 4 1.18Up
Larval Salivary gland124 ± 44 of 4 0.43Down
Larval midgut78 ± 24 of 4 0.27Down
Larval tubule125 ± 34 of 4 0.40Down
Larval hindgut150 ± 34 of 4 0.51Down
Larval fat body141 ± 134 of 4 0.50Down
Larval trachea207 ± 64 of 4 0.71Down
Larval carcass335 ± 274 of 4 1.15None
S2 cells (growing)182 ± 74 of 4 0.62Down
Whole fly292 ± 144 of 4

Looking for FBgn0036967. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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