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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036969 through 18771 annotations produced 1 hits


Serpin 77Bb (Spn77Bb):

Annotation Number : CG6663
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036969
Gbrowse : chr3L:20314116-20315420 (+) // 100.0 // /// chr3L:20335813-20336951 (+) // 73.23 // /// chrUextra:18934687-18935375 (+) // 49.78 //
Probeset : 1641642_at
Accessions : protein= NP_649206;, nucleotide= NM_140949;
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // inferred from sequence or structural similarity /// 0004867 /
FlyMine data for FBgn0036969.
Homophila reports that CG6663 is a close match (5e-11) to human gene PAI1;PLANH1;SERPINE1 (NP_000593), a gene associated with Hemorrhagic diathesis due to PAI1 deficiency (3);Thrombophilia due to excessive plasminogen activator inhibitor (1).
VDRC has 4 RNAi stocks for FBgn0036969 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head3 ± 10 of 4 0.00Down
Eye3 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland11 ± 50 of 4 0.01Down
Crop5 ± 10 of 4 0.00Down
Midgut3 ± 00 of 4 0.00Down
Tubule4 ± 10 of 4 0.00Down
Hindgut5 ± 20 of 4 0.00Down
Heart3 ± 00 of 4 0.00Down
Fat body8 ± 30 of 4 0.01Down
Ovary1 ± 00 of 4 0.00Down
Testis109 ± 334 of 4 0.10Down
Male accessory glands3375 ± 8314 of 4 4.00None
Virgin spermatheca4 ± 10 of 4 0.01Down
Mated spermatheca10 ± 20 of 4 0.01Down
Adult carcass5 ± 20 of 4 0.00Down
Larval CNS2 ± 10 of 4 0.00Down
Larval Salivary gland8 ± 20 of 4 0.01Down
Larval midgut3 ± 00 of 4 0.00Down
Larval tubule5 ± 00 of 4 0.00Down
Larval hindgut6 ± 10 of 4 0.01Down
Larval fat body10 ± 22 of 4 0.00Down
Larval trachea8 ± 22 of 4 0.01Down
Larval carcass5 ± 10 of 4 0.01Down
S2 cells (growing)4 ± 10 of 4 0.01Down
Whole fly854 ± 1604 of 4

Looking for FBgn0036969. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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