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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0036970 through 18771 annotations produced 1 hits


Serpin 77Bc (Spn77Bc):

Annotation Number : CG6289
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036970
Gbrowse : chrUextra:18934690-18935375 (+) // 42.63 // /// chr3L:20335805-20337279 (+) // 100.0 //
Probeset : 1625773_at
Accessions : protein= NP_649207;, nucleotide= NM_140950;
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // inferred from sequence or structural similarity /// 0004867 /
FlyMine data for FBgn0036970.
BDGP gene expression has embryonic in situ data for CG6289: 4 pix of staining in 1 body parts.
Homophila reports that CG6289 is a close match (8e-11) to human gene PAI1;PLANH1;SERPINE1 (NP_000593), a gene associated with Hemorrhagic diathesis due to PAI1 deficiency (3);Thrombophilia due to excessive plasminogen activator inhibitor (1).
VDRC has 2 RNAi stocks for FBgn0036970 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 14 of 4 0.00Down
Head4 ± 10 of 4 0.00Down
Eye4 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion6 ± 10 of 4 0.00Down
Salivary gland1 ± 00 of 4 0.00Down
Crop3 ± 10 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule4 ± 10 of 4 0.00Down
Hindgut2 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.00Down
Fat body6 ± 52 of 4 0.01Down
Ovary2 ± 00 of 4 0.00Down
Testis61 ± 194 of 4 0.10Down
Male accessory glands1699 ± 3444 of 4 2.60None
Virgin spermatheca2 ± 00 of 4 0.00Down
Mated spermatheca4 ± 10 of 4 0.01Down
Adult carcass8 ± 20 of 4 0.00Down
Larval CNS1 ± 10 of 4 0.00Down
Larval Salivary gland0 ± 00 of 4 0.00Down
Larval midgut2 ± 10 of 4 0.00Down
Larval tubule5 ± 11 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.00Down
Larval fat body7 ± 20 of 4 0.00Down
Larval trachea9 ± 41 of 4 0.01Down
Larval carcass1 ± 00 of 4 0.00Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly662 ± 624 of 4

Looking for FBgn0036970. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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