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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036973 through 18771 annotations produced 2 hits



(CG5585):

Annotation Number : CG5585
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036973
Gbrowse : chr3L:20338830-20341039 (-) // 100.0 //
Probeset : 1627743_at
Accessions : protein= NP_649209;, nucleotide= NM_140952;
FlyMine data for FBgn0036973.
BDGP gene expression has embryonic in situ data for CG5585: 14 pix of staining in 12 body parts.
TRiP has 1 RNAi stocks for FBgn0036973 available for purchase.
VDRC has 3 RNAi stocks for FBgn0036973 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 14 of 4 1.10None
Head32 14 of 4 0.70Down
Eye28 24 of 4 0.57Down
Thoracicoabdominal ganglion50 24 of 4 1.00None
Salivary gland53 64 of 4 1.06None
Crop39 24 of 4 0.80Down
Midgut24 14 of 4 0.50Down
Tubule59 34 of 4 1.20Up
Hindgut39 14 of 4 0.80Down
Heart27 34 of 4 0.55Down
Fat body29 74 of 4 0.59Down
Ovary74 44 of 4 1.50Up
Testis148 34 of 4 3.00Up
Male accessory glands36 44 of 4 0.70Down
Virgin spermatheca48 44 of 4 0.97None
Mated spermatheca59 64 of 4 1.18None
Adult carcass30 14 of 4 0.60Down
Larval CNS96 94 of 4 1.92Up
Larval Salivary gland37 54 of 4 0.75None
Larval midgut37 34 of 4 0.75Down
Larval tubule42 44 of 4 0.80None
Larval hindgut33 24 of 4 0.66Down
Larval fat body52 84 of 4 1.00None
Larval trachea41 54 of 4 0.82None
Larval carcass30 24 of 4 0.60Down
S2 cells (growing)43 04 of 4 0.86None
Whole fly50 24 of 4



/// (CG5585 /// CG6434):

Annotation Number : CG6434
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036972 /// FBgn0036973
Gbrowse : chr3L:20315476-20316309 (-) // 100.0 //
Probeset : 1626046_s_at
Accessions : protein= NP_649208; /// NP_649209;, nucleotide= NM_140951; /// NM_140952;
FlyMine data for FBgn0036972 /// FBgn0036973.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 14 of 4 1.10None
Head22 24 of 4 0.60Down
Eye24 14 of 4 0.66Down
Thoracicoabdominal ganglion23 24 of 4 0.60Down
Salivary gland20 42 of 4 0.56Down
Crop35 24 of 4 0.90None
Midgut21 24 of 4 0.60Down
Tubule11 12 of 4 0.30Down
Hindgut27 04 of 4 0.70Down
Heart18 24 of 4 0.50Down
Fat body18 43 of 4 0.48Down
Ovary52 14 of 4 1.40Up
Testis49 24 of 4 1.30Up
Male accessory glands18 30 of 4 0.50Down
Virgin spermatheca9 01 of 4 0.26Down
Mated spermatheca5 00 of 4 0.16Down
Adult carcass18 23 of 4 0.50Down
Larval CNS60 44 of 4 1.63Up
Larval Salivary gland23 14 of 4 0.64Down
Larval midgut13 02 of 4 0.35Down
Larval tubule35 34 of 4 0.90None
Larval hindgut17 14 of 4 0.48Down
Larval fat body40 34 of 4 1.10None
Larval trachea42 24 of 4 1.15None
Larval carcass17 04 of 4 0.48Down
S2 cells (growing)41 24 of 4 1.11None
Whole fly37 24 of 4

Looking for FBgn0036973. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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