FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0036974 through 18771 annotations produced 1 hits

eukaryotic release factor 1 (eRF1):

Annotation Number : CG5605
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036974
Gbrowse : chr3L:20341429-20346229 (+) // 100.0 //
Probeset : 1640288_s_at
Accessions : protein= NP_649210; /// NP_730517; /// NP_730518; /// NP_730519; /// NP_730520; /// NP_788547;, nucleotide= NM_140953; /// NM_168845; /// NM_168846; /// NM_168847; /// NM_168848; /// NM_176369;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // non-traceable author statement /
Interpro : "0003747 // translation release factor activity // non-traceable author statement /// 0005515 // protein binding // infe
FlyMine data for FBgn0036974.
BDGP gene expression has embryonic in situ data for eRF1: 4 pix of staining in 1 body parts.
BioGrid reports that CG5605 interacts with CG8884 CG9375 CG18085 .
VDRC has 1 RNAi stocks for FBgn0036974 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	239 ± 7	4 of 4	0.40	Down
Head	402 ± 12	4 of 4	0.60	Down
Eye	764 ± 11	4 of 4	1.20	Up
Thoracicoabdominal ganglion	259 ± 3	4 of 4	0.40	Down
Salivary gland	1182 ± 42	4 of 4	1.85	Up
Crop	670 ± 14	4 of 4	1.10	None
Midgut	400 ± 17	4 of 4	0.60	Down
Tubule	1001 ± 42	4 of 4	1.60	Up
Hindgut	575 ± 17	4 of 4	0.90	Down
Heart	387 ± 8	4 of 4	0.61	Down
Fat body	506 ± 36	4 of 4	0.79	Down
Ovary	922 ± 6	4 of 4	1.40	Up
Testis	1011 ± 49	4 of 4	1.60	Up
Male accessory glands	1143 ± 24	4 of 4	1.80	Up
Virgin spermatheca	600 ± 14	4 of 4	0.94	None
Mated spermatheca	706 ± 37	4 of 4	1.11	None
Adult carcass	357 ± 12	4 of 4	0.60	Down
Larval CNS	618 ± 28	4 of 4	0.97	None
Larval Salivary gland	1577 ± 118	4 of 4	2.47	Up
Larval midgut	387 ± 11	4 of 4	0.61	Down
Larval tubule	883 ± 30	4 of 4	1.40	Up
Larval hindgut	825 ± 42	4 of 4	1.29	Up
Larval fat body	855 ± 33	4 of 4	1.30	Up
Larval trachea	817 ± 77	4 of 4	1.28	Up
Larval carcass	1015 ± 39	4 of 4	1.59	Up
S2 cells (growing)	1249 ± 9	4 of 4	1.96	Up
Whole fly	638 ± 11	4 of 4

Looking for FBgn0036974. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720