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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036978 through 18771 annotations produced 1 hits



Toll-9 (Toll-9):

Annotation Number : CG5528
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036978
Gbrowse : chr3L:20355139-20359824 (-) // 100.0 //
Probeset : 1632331_at
Accessions : protein= NP_649214;, nucleotide= NM_140957;
Pathway : 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0031224 // intrinsic to membrane
Interpro : 0004888 // transmembrane receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor
FlyMine data for FBgn0036978.
Homophila reports that CG5528 is a close match (3e-11) to human gene (NP_003256), a gene associated with .
TRiP has 2 RNAi stocks for FBgn0036978 available for purchase.
VDRC has 5 RNAi stocks for FBgn0036978 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 1.10None
Head2 ± 00 of 4 0.70None
Eye0 ± 00 of 4 0.24None
Thoracicoabdominal ganglion5 ± 10 of 4 1.50None
Salivary gland8 ± 60 of 4 2.19None
Crop1 ± 00 of 4 0.50None
Midgut59 ± 24 of 416.00Up
Tubule3 ± 00 of 4 1.00None
Hindgut5 ± 20 of 4 1.40None
Heart1 ± 00 of 4 0.39None
Fat body4 ± 10 of 4 1.11None
Ovary2 ± 10 of 4 0.70None
Testis4 ± 10 of 4 1.20None
Male accessory glands10 ± 00 of 4 2.90Up
Virgin spermatheca4 ± 10 of 4 1.12None
Mated spermatheca1 ± 00 of 4 0.41None
Adult carcass4 ± 10 of 4 1.10None
Larval CNS3 ± 10 of 4 0.83None
Larval Salivary gland6 ± 20 of 4 1.71None
Larval midgut57 ± 23 of 415.29Up
Larval tubule3 ± 10 of 4 0.90None
Larval hindgut2 ± 00 of 4 0.61None
Larval fat body3 ± 10 of 4 0.80None
Larval trachea0 ± 00 of 4 0.12None
Larval carcass7 ± 10 of 4 2.05None
S2 cells (growing)3 ± 00 of 4 0.83None
Whole fly3 ± 20 of 4

Looking for FBgn0036978. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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