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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036979 through 18771 annotations produced 1 hits



(CG13247):

Annotation Number : CG13247
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036979
Gbrowse : chr3L:20363665-20364799 (+) // 100.0 //
Probeset : 1632886_at
Accessions : protein= NP_649215;, nucleotide= NM_140958;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004222 // metalloendopeptidase activity // inf
FlyMine data for FBgn0036979.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.60None
Head5 ± 11 of 4 1.20None
Eye5 ± 13 of 4 1.41None
Thoracicoabdominal ganglion1 ± 00 of 4 0.40None
Salivary gland9 ± 40 of 4 2.21None
Crop15 ± 14 of 4 3.90Up
Midgut6 ± 10 of 4 1.50None
Tubule2 ± 00 of 4 0.70None
Hindgut4 ± 01 of 4 1.10None
Heart10 ± 14 of 4 2.58Up
Fat body3 ± 10 of 4 0.89None
Ovary1 ± 00 of 4 0.30None
Testis4 ± 01 of 4 1.10None
Male accessory glands6 ± 10 of 4 1.50None
Virgin spermatheca1 ± 00 of 4 0.28None
Mated spermatheca2 ± 10 of 4 0.66None
Adult carcass6 ± 20 of 4 1.50None
Larval CNS2 ± 02 of 4 0.63None
Larval Salivary gland4 ± 10 of 4 0.98None
Larval midgut1 ± 00 of 4 0.40None
Larval tubule2 ± 10 of 4 0.60None
Larval hindgut2 ± 00 of 4 0.65None
Larval fat body5 ± 10 of 4 1.20None
Larval trachea11 ± 24 of 4 2.80Up
Larval carcass6 ± 12 of 4 1.55None
S2 cells (growing)2 ± 10 of 4 0.62None
Whole fly4 ± 22 of 4

Looking for FBgn0036979. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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