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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036980 through 18771 annotations produced 1 hits



RhoBTB (RhoBTB):

Annotation Number : CG5701
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036980
Gbrowse : chr3L:20369311-20375500 (+) // 100.0 //
Probeset : 1624530_at
Accessions : protein= NP_649216;, nucleotide= NM_140959;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from seq
FlyMine data for FBgn0036980.
BDGP gene expression has embryonic in situ data for RhoBTB: 53 pix of staining in 13 body parts.
Homophila reports that CG5701 is a close match (2e-27) to human gene RAC2 (NP_002863), a gene associated with Neutrophil immunodeficiency syndrome, 608203 (3).
BioGrid reports that CG5701 interacts with CG6393 CG7856 CG6416 CG6707 CG8292 CG9426 .
TRiP has 2 RNAi stocks for FBgn0036980 available for purchase.
VDRC has 1 RNAi stocks for FBgn0036980 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain478 ± 304 of 4 1.60Up
Head223 ± 54 of 4 0.80Down
Eye219 ± 24 of 4 0.75Down
Thoracicoabdominal ganglion438 ± 164 of 4 1.50Up
Salivary gland217 ± 74 of 4 0.74Down
Crop231 ± 64 of 4 0.80Down
Midgut133 ± 64 of 4 0.50Down
Tubule1590 ± 1154 of 4 5.40Up
Hindgut401 ± 104 of 4 1.40Up
Heart252 ± 114 of 4 0.86None
Fat body272 ± 414 of 4 0.93None
Ovary549 ± 114 of 4 1.90Up
Testis78 ± 34 of 4 0.30Down
Male accessory glands233 ± 114 of 4 0.80Down
Virgin spermatheca484 ± 314 of 4 1.66Up
Mated spermatheca446 ± 254 of 4 1.53Up
Adult carcass306 ± 164 of 4 1.00None
Larval CNS346 ± 484 of 4 1.18None
Larval Salivary gland120 ± 74 of 4 0.41Down
Larval midgut146 ± 294 of 4 0.50Down
Larval tubule1439 ± 154 of 4 4.90Up
Larval hindgut401 ± 344 of 4 1.37Up
Larval fat body261 ± 84 of 4 0.90None
Larval trachea210 ± 284 of 4 0.72Down
Larval carcass156 ± 174 of 4 0.54Down
S2 cells (growing)266 ± 94 of 4 0.91None
Whole fly292 ± 174 of 4

Looking for FBgn0036980. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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