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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036993 through 18771 annotations produced 1 hits



(CG5910):

Annotation Number : CG5910
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036993
Gbrowse : chr3L:20435518-20443714 (+) // 100.0 //
Probeset : 1623928_at
Accessions : protein= NP_001163482; /// NP_649226;, nucleotide= NM_001170011; /// NM_140969;
FlyMine data for FBgn0036993.
VDRC has 1 RNAi stocks for FBgn0036993 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 14 of 4 0.40Down
Head343 144 of 4 2.50Up
Eye657 354 of 4 4.70Up
Thoracicoabdominal ganglion63 34 of 4 0.50Down
Salivary gland17 50 of 4 0.13Down
Crop74 34 of 4 0.50None
Midgut789 494 of 4 5.60Up
Tubule58 194 of 4 0.40Down
Hindgut455 104 of 4 3.30Up
Heart435 164 of 4 3.11Up
Fat body641 294 of 4 4.58Up
Ovary5 00 of 4 0.00Down
Testis23 14 of 4 0.20Down
Male accessory glands73 34 of 4 0.50Down
Virgin spermatheca997 344 of 4 7.12Up
Mated spermatheca642 334 of 4 4.59Up
Adult carcass324 194 of 4 2.30Up
Larval CNS147 94 of 4 1.05None
Larval Salivary gland70 134 of 4 0.51Down
Larval midgut154 84 of 4 1.10None
Larval tubule53 84 of 4 0.40Down
Larval hindgut647 254 of 4 4.63Up
Larval fat body63 84 of 4 0.50Down
Larval trachea24 144 of 4 0.18Down
Larval carcass24 24 of 4 0.18Down
S2 cells (growing)24 24 of 4 0.18Down
Whole fly140 204 of 4

Looking for FBgn0036993. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime