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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036995 through 18771 annotations produced 1 hits



(CG5195):

Annotation Number : CG5195
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036995
Gbrowse : chr3L:20447789-20457448 (-) // 100.0 //
Probeset : 1626578_at
Accessions : protein= NP_649228;, nucleotide= NM_140971;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0003887 // DNA-directed DNA polymerase activity // inferred from electronic annotation /// 0005515 // protein binding //
FlyMine data for FBgn0036995.
Homophila reports that CG5195 is a close match (3e-12) to human gene CSCD;DCN (NP_598010), a gene associated with Corneal dystrophy, congenital stromal, 610048 (3).
TRiP has 1 RNAi stocks for FBgn0036995 available for purchase.
VDRC has 2 RNAi stocks for FBgn0036995 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 54 of 4 4.50Up
Head22 24 of 4 3.20Up
Eye21 84 of 4 3.12None
Thoracicoabdominal ganglion13 24 of 4 1.90Up
Salivary gland14 20 of 4 2.06Up
Crop3 00 of 4 0.50Down
Midgut16 14 of 4 2.40Up
Tubule3 00 of 4 0.50Down
Hindgut2 10 of 4 0.40Down
Heart2 10 of 4 0.39None
Fat body7 10 of 4 1.09None
Ovary2 00 of 4 0.30Down
Testis92 44 of 413.30Up
Male accessory glands3 10 of 4 0.50None
Virgin spermatheca9 10 of 4 1.34None
Mated spermatheca10 11 of 4 1.46None
Adult carcass17 30 of 4 2.60Up
Larval CNS52 114 of 4 7.47Up
Larval Salivary gland8 30 of 4 1.27None
Larval midgut3 00 of 4 0.43Down
Larval tubule5 01 of 4 0.80None
Larval hindgut6 11 of 4 0.87None
Larval fat body23 63 of 4 3.40None
Larval trachea5 21 of 4 0.82None
Larval carcass3 10 of 4 0.55None
S2 cells (growing)2 00 of 4 0.35Down
Whole fly7 10 of 4

Looking for FBgn0036995. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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