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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036997 through 18771 annotations produced 1 hits



(CG5955):

Annotation Number : CG5955
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036997
Gbrowse : chr3L:20460047-20462702 (+) // 100.0 //
Probeset : 1625052_at
Accessions : protein= NP_649230;, nucleotide= NM_140973;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0003978 // UDP-glucose 4-epimerase activity //
FlyMine data for FBgn0036997.
BDGP gene expression has embryonic in situ data for CG5955: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0036997 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain161 34 of 4 6.30Up
Head196 164 of 4 7.70Up
Eye94 134 of 4 3.68Up
Thoracicoabdominal ganglion214 154 of 4 8.40Up
Salivary gland8 50 of 4 0.32Down
Crop18 30 of 4 0.70None
Midgut9 10 of 4 0.40Down
Tubule4 00 of 4 0.20Down
Hindgut14 10 of 4 0.60Down
Heart21 34 of 4 0.84None
Fat body56 393 of 4 2.22None
Ovary5 10 of 4 0.20Down
Testis9 10 of 4 0.40Down
Male accessory glands12 30 of 4 0.50Down
Virgin spermatheca31 42 of 4 1.22None
Mated spermatheca35 91 of 4 1.37None
Adult carcass88 64 of 4 3.50Up
Larval CNS386 804 of 415.09Up
Larval Salivary gland3 10 of 4 0.15Down
Larval midgut18 20 of 4 0.71None
Larval tubule8 20 of 4 0.30Down
Larval hindgut18 22 of 4 0.73None
Larval fat body6 20 of 4 0.30Down
Larval trachea9 32 of 4 0.37Down
Larval carcass142 374 of 4 5.58None
S2 cells (growing)13 10 of 4 0.54Down
Whole fly25 23 of 4

Looking for FBgn0036997. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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