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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0036998 through 18771 annotations produced 1 hits



(CG5969):

Annotation Number : CG5969
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036998
Gbrowse : chr3L:20466896-20467894 (+) // 100.0 //
Probeset : 1623797_at
Accessions : protein= NP_788549;, nucleotide= NM_176371;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036998.
VDRC has 2 RNAi stocks for FBgn0036998 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain212 44 of 4 0.60Down
Head200 84 of 4 0.60Down
Eye168 124 of 4 0.49Down
Thoracicoabdominal ganglion203 174 of 4 0.60Down
Salivary gland846 394 of 4 2.45Up
Crop293 164 of 4 0.90None
Midgut398 94 of 4 1.20None
Tubule294 164 of 4 0.90Down
Hindgut403 104 of 4 1.20None
Heart195 154 of 4 0.57Down
Fat body240 284 of 4 0.70Down
Ovary609 274 of 4 1.80Up
Testis279 104 of 4 0.80None
Male accessory glands355 184 of 4 1.00None
Virgin spermatheca265 94 of 4 0.77Down
Mated spermatheca285 224 of 4 0.83None
Adult carcass195 64 of 4 0.60Down
Larval CNS325 174 of 4 0.94None
Larval Salivary gland509 214 of 4 1.48Up
Larval midgut504 504 of 4 1.46Up
Larval tubule321 294 of 4 0.90None
Larval hindgut766 434 of 4 2.22Up
Larval fat body204 94 of 4 0.60Down
Larval trachea362 264 of 4 1.05None
Larval carcass269 134 of 4 0.78Down
S2 cells (growing)499 44 of 4 1.45Up
Whole fly344 224 of 4

Looking for FBgn0036998. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime